Papers associated with primary germ layer (and shh)

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	Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues., Eroshkin FM., Int J Mol Sci. January 10, 2024; 25 (2):
	Using Xenopus to discover new candidate genes involved in BOR and other congenital hearing loss syndromes., Neal SJ., J Exp Zool B Mol Dev Evol. October 13, 2023;
	Cilia-localized GID/CTLH ubiquitin ligase complex regulates protein homeostasis of sonic hedgehog signaling components., Hantel F., J Cell Sci. May 1, 2022; 135 (9):
	Targeted search for scaling genes reveals matrixmetalloproteinase 3 as a scaler of the dorsal-ventral pattern in Xenopus laevis embryos., Orlov EE., Dev Cell. January 10, 2022; 57 (1): 95-111.e12.
	Nodal asymmetry and hedgehog signaling during vertebrate left-right symmetry breaking., Negretti MI., Front Cell Dev Biol. January 1, 2022; 10 957211.
	Tbx5 drives Aldh1a2 expression to regulate a RA-Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development., Rankin SA, Rankin SA., Elife. October 13, 2021; 10
	Ttc30a affects tubulin modifications in a model for ciliary chondrodysplasia with polycystic kidney disease., Getwan M., Proc Natl Acad Sci U S A. September 28, 2021; 118 (39):
	Rab7 is required for mesoderm patterning and gastrulation in Xenopus., Kreis J., Biol Open. July 15, 2021; 10 (7):
	DLG5 variants are associated with multiple congenital anomalies including ciliopathy phenotypes., Marquez J., J Med Genet. July 1, 2021; 58 (7): 453-464.
	Protocadherin-1 is expressed in the notochord of mouse embryo but is dispensable for its formation., Fukunaga K., Biochem Biophys Rep. June 15, 2021; 27 101047.
	Pinhead antagonizes Admp to promote notochord formation., Itoh K., iScience. May 7, 2021; 24 (6): 102520.
	Evolution of Somite Compartmentalization: A View From Xenopus., Della Gaspera B., Front Cell Dev Biol. January 1, 2021; 9 790847.
	TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M., Elife. September 14, 2020; 9
	Model systems for regeneration: Xenopus., Phipps LS., Development. March 19, 2020; 147 (6):
	The AP-1 transcription factor JunB functions in Xenopus tail regeneration by positively regulating cell proliferation., Nakamura M., Biochem Biophys Res Commun. February 19, 2020; 522 (4): 990-995.
	Regeneration enhancers: Starting a journey to unravel regulatory events in tissue regeneration., Rodriguez AM., Semin Cell Dev Biol. January 1, 2020;
	Endosome-Mediated Epithelial Remodeling Downstream of Hedgehog-Gli Is Required for Tracheoesophageal Separation., Nasr T., Dev Cell. December 16, 2019; 51 (6): 665-674.e6.
	Cell type-specific transcriptome analysis unveils secreted signaling molecule genes expressed in apical epithelial cap during appendage regeneration., Okumura A., Dev Growth Differ. December 1, 2019; 61 (9): 447-456.
	Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/β-Catenin response driving Spemann organizer formation., Sena E., Development. May 22, 2019; 146 (10):
	A dual function of FGF signaling in Xenopus left-right axis formation., Schneider I., Development. May 10, 2019; 146 (9):
	Xenopus slc7a5 is essential for notochord function and eye development., Katada T., Mech Dev. February 1, 2019; 155 48-59.
	Gli2 is required for the induction and migration of Xenopus laevis neural crest., Cerrizuela S., Mech Dev. December 1, 2018; 154 219-239.
	WDR5 regulates left-right patterning via chromatin-dependent and -independent functions., Kulkarni SS., Development. November 28, 2018; 145 (23):
	Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development., Steimle JD., Proc Natl Acad Sci U S A. November 6, 2018; 115 (45): E10615-E10624.
	Divergent axial morphogenesis and early shh expression in vertebrate prospective floor plate., Kremnyov S., Evodevo. January 31, 2018; 9 4.
	Evolutionary Proteomics Uncovers Ancient Associations of Cilia with Signaling Pathways., Sigg MA., Dev Cell. December 18, 2017; 43 (6): 744-762.e11.
	Sonic hedgehog antagonists reduce size and alter patterning of the frog inner ear., Zarei S., Dev Neurobiol. December 1, 2017; 77 (12): 1385-1400.
	A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates., Plouhinec JL., PLoS Biol. October 19, 2017; 15 (10): e2004045.
	hmmr mediates anterior neural tube closure and morphogenesis in the frog Xenopus., Prager A., Dev Biol. October 1, 2017; 430 (1): 188-201.
	Mouth development., Chen J., Wiley Interdiscip Rev Dev Biol. September 1, 2017; 6 (5):
	Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK., Dev Biol. June 15, 2017; 426 (2): 429-441.
	Coordinating heart morphogenesis: A novel role for hyperpolarization-activated cyclic nucleotide-gated (HCN) channels during cardiogenesis in Xenopus laevis., Pitcairn E., Commun Integr Biol. May 10, 2017; 10 (3): e1309488.
	A novel role of the organizer gene Goosecoid as an inhibitor of Wnt/PCP-mediated convergent extension in Xenopus and mouse., Ulmer B., Sci Rep. February 21, 2017; 7 43010.
	Hedgehog-dependent E3-ligase Midline1 regulates ubiquitin-mediated proteasomal degradation of Pax6 during visual system development., Pfirrmann T., Proc Natl Acad Sci U S A. September 6, 2016; 113 (36): 10103-8.
	A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification., Rankin SA, Rankin SA., Cell Rep. June 28, 2016; 16 (1): 66-78.
	The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery., Toriyama M., Nat Genet. June 1, 2016; 48 (6): 648-56.
	Xenopus Limb bud morphogenesis., Keenan SR., Dev Dyn. March 1, 2016; 245 (3): 233-43.
	Making muscle: Morphogenetic movements and molecular mechanisms of myogenesis in Xenopus laevis., Sabillo A., Semin Cell Dev Biol. March 1, 2016; 51 80-91.
	G protein-coupled receptors Flop1 and Flop2 inhibit Wnt/β-catenin signaling and are essential for head formation in Xenopus., Miyagi A., Dev Biol. November 1, 2015; 407 (1): 131-44.
	Epigenetic modification maintains intrinsic limb-cell identity in Xenopus limb bud regeneration., Hayashi S., Dev Biol. October 15, 2015; 406 (2): 271-82.
	At new heights - endodermal lineages in development and disease., Ober EA., Development. June 1, 2015; 142 (11): 1912-1917.
	ATP4 and ciliation in the neuroectoderm and endoderm of Xenopus embryos and tadpoles., Walentek P., Data Brief. April 20, 2015; 4 22-31.
	A Molecular atlas of Xenopus respiratory system development., Rankin SA, Rankin SA., Dev Dyn. January 1, 2015; 244 (1): 69-85.
	Hedgehog activity controls opening of the primary mouth., Tabler JM., Dev Biol. December 1, 2014; 396 (1): 1-7.
	The conserved barH-like homeobox-2 gene barhl2 acts downstream of orthodentricle-2 and together with iroquois-3 in establishment of the caudal forebrain signaling center induced by Sonic Hedgehog., Juraver-Geslin HA., Dev Biol. December 1, 2014; 396 (1): 107-20.
	Chibby functions in Xenopus ciliary assembly, embryonic development, and the regulation of gene expression., Shi J., Dev Biol. November 15, 2014; 395 (2): 287-98.
	Gene regulatory networks governing lung specification., Rankin SA, Rankin SA., J Cell Biochem. August 1, 2014; 115 (8): 1343-50.
	Sulf1 influences the Shh morphogen gradient during the dorsal ventral patterning of the neural tube in Xenopus tropicalis., Ramsbottom SA., Dev Biol. July 15, 2014; 391 (2): 207-18.
	The chicken left right organizer has nonmotile cilia which are lost in a stage-dependent manner in the talpid(3) ciliopathy., Stephen LA., Genesis. June 1, 2014; 52 (6): 600-13.
	Developmental expression and role of Kinesin Eg5 during Xenopus laevis embryogenesis., Fernández JP., Dev Dyn. April 1, 2014; 243 (4): 527-40.

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