Papers associated with primary germ layer (and id3)

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	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs., Liang T., Cell Rep. July 12, 2022; 40 (2): 111038.
	Evo-Devo of Urbilateria and its larval forms., De Robertis EM., Dev Biol. July 1, 2022; 487 10-20.
	Skeletal muscle differentiation drives a dramatic downregulation of RNA polymerase III activity and differential expression of Polr3g isoforms., McQueen C., Dev Biol. October 1, 2019; 454 (1): 74-84.
	Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
	A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells., Buitrago-Delgado E., Dev Biol. December 15, 2018; 444 (2): 50-61.
	The neural border: Induction, specification and maturation of the territory that generates neural crest cells., Pla P., Dev Biol. December 1, 2018; 444 Suppl 1 S36-S46.
	Xenopus SOX5 enhances myogenic transcription indirectly through transrepression., Della Gaspera B., Dev Biol. October 15, 2018; 442 (2): 262-275.
	Histone deacetylase activity has an essential role in establishing and maintaining the vertebrate neural crest., Rao A., Development. August 8, 2018; 145 (15):
	The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution., Briggs JA., Science. June 1, 2018; 360 (6392):
	FGF mediated MAPK and PI3K/Akt Signals make distinct contributions to pluripotency and the establishment of Neural Crest., Geary L., Elife. January 19, 2018; 7
	Id genes are essential for early heart formation., Cunningham TJ., Genes Dev. July 1, 2017; 31 (13): 1325-1338.
	Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs., Stevens ML., Development. April 1, 2017; 144 (7): 1283-1295.
	Apolipoprotein C-I mediates Wnt/Ctnnb1 signaling during neural border formation and is required for neural crest development., Yokota C., Int J Dev Biol. January 1, 2017; 61 (6-7): 415-425.
	The Proto-oncogene Transcription Factor Ets1 Regulates Neural Crest Development through Histone Deacetylase 1 to Mediate Output of Bone Morphogenetic Protein Signaling., Wang C., J Biol Chem. September 4, 2015; 290 (36): 21925-38.
	NEURODEVELOPMENT. Shared regulatory programs suggest retention of blastula-stage potential in neural crest cells., Buitrago-Delgado E., Science. June 19, 2015; 348 (6241): 1332-5.
	Sox5 Is a DNA-binding cofactor for BMP R-Smads that directs target specificity during patterning of the early ectoderm., Nordin K., Dev Cell. November 10, 2014; 31 (3): 374-382.
	Expression of Ski can act as a negative feedback mechanism on retinoic acid signaling., Melling MA., Dev Dyn. June 1, 2013; 242 (6): 604-13.
	Pax3 and Zic1 drive induction and differentiation of multipotent, migratory, and functional neural crest in Xenopus embryos., Milet C., Proc Natl Acad Sci U S A. April 2, 2013; 110 (14): 5528-33.
	Current perspectives of the signaling pathways directing neural crest induction., Stuhlmiller TJ., Cell Mol Life Sci. November 1, 2012; 69 (22): 3715-37.
	KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins., Matsukawa S., Int J Dev Biol. January 1, 2012; 56 (5): 351-6.
	Bmp indicator mice reveal dynamic regulation of transcriptional response., Javier AL., PLoS One. January 1, 2012; 7 (9): e42566.
	Xenopus Meis3 protein lies at a nexus downstream to Zic1 and Pax3 proteins, regulating multiple cell-fates during early nervous system development., Gutkovich YE., Dev Biol. February 1, 2010; 338 (1): 50-62.
	Hairy2 functions through both DNA-binding and non DNA-binding mechanisms at the neural plate border in Xenopus., Nichane M., Dev Biol. October 15, 2008; 322 (2): 368-80.
	Hairy2-Id3 interactions play an essential role in Xenopus neural crest progenitor specification., Nichane M., Dev Biol. October 15, 2008; 322 (2): 355-67.
	Modulating the activity of neural crest regulatory factors., Taylor KM., Curr Opin Genet Dev. August 1, 2007; 17 (4): 326-31.
	Phylogenetic footprinting and genome scanning identify vertebrate BMP response elements and new target genes., von Bubnoff A., Dev Biol. May 15, 2005; 281 (2): 210-26.
	Xenopus Id3 is required downstream of Myc for the formation of multipotent neural crest progenitor cells., Light W., Development. April 1, 2005; 132 (8): 1831-41.
	Inhibition of neurogenesis by SRp38, a neuroD-regulated RNA-binding protein., Liu KJ, Liu KJ., Development. April 1, 2005; 132 (7): 1511-23.
	To proliferate or to die: role of Id3 in cell cycle progression and survival of neural crest progenitors., Kee Y., Genes Dev. March 15, 2005; 19 (6): 744-55.
	Pilot morpholino screen in Xenopus tropicalis identifies a novel gene involved in head development., Kenwrick S., Dev Dyn. February 1, 2004; 229 (2): 289-99.
	Cloning and characterization of Xenopus Id4 reveals differing roles for Id genes., Liu KJ, Liu KJ., Dev Biol. December 15, 2003; 264 (2): 339-51.
	Notch signaling is involved in the regulation of Id3 gene transcription during Xenopus embryogenesis., Reynaud-Deonauth S., Differentiation. January 1, 2002; 69 (4-5): 198-208.
	Expression of helix-loop-helix type negative regulators of differentiation during limb regeneration in urodeles and anurans., Shimizu-Nishikawa K., Dev Growth Differ. December 1, 1999; 41 (6): 731-43.
	Localized XId3 mRNA activation in Xenopus embryos by cytoplasmic polyadenylation., Afouda AB., Mech Dev. October 1, 1999; 88 (1): 15-31.
	Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning., Gawantka V., Mech Dev. October 1, 1998; 77 (2): 95-141.
	Id gene activity during Xenopus embryogenesis., Zhang H., Mech Dev. April 1, 1995; 50 (2-3): 119-30.

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