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Summary Anatomy Item Literature (7318) Expression Attributions Wiki
XB-ANAT-489

Papers associated with trunk (and shh)

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Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues., Eroshkin FM., Int J Mol Sci. January 10, 2024; 25 (2):         

An archetype and scaling of developmental tissue dynamics across species., Morishita Y., Nat Commun. December 11, 2023; 14 (1): 8199.                              

Normal Table of Xenopus development: a new graphical resource., Zahn N., Development. July 15, 2022; 149 (14):                         

Essential roles of YAP-TEAD complex in adult stem cell development during thyroid hormone-induced intestinal remodeling of Xenopus laevis., Hasebe T., Cell Tissue Res. May 1, 2022; 388 (2): 313-329.

Cilia-localized GID/CTLH ubiquitin ligase complex regulates protein homeostasis of sonic hedgehog signaling components., Hantel F., J Cell Sci. May 1, 2022; 135 (9):                                     

Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network., Wu Y., Elife. January 20, 2022; 11                             

Tbx5 drives Aldh1a2 expression to regulate a RA-Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development., Rankin SA, Rankin SA., Elife. October 13, 2021; 10


Ttc30a affects tubulin modifications in a model for ciliary chondrodysplasia with polycystic kidney disease., Getwan M., Proc Natl Acad Sci U S A. September 28, 2021; 118 (39):                                                   

Rab7 is required for mesoderm patterning and gastrulation in Xenopus., Kreis J., Biol Open. July 15, 2021; 10 (7):                                           

DLG5 variants are associated with multiple congenital anomalies including ciliopathy phenotypes., Marquez J., J Med Genet. July 1, 2021; 58 (7): 453-464.                        

Protocadherin-1 is expressed in the notochord of mouse embryo but is dispensable for its formation., Fukunaga K., Biochem Biophys Rep. June 15, 2021; 27 101047.          

Thyroid Hormone Receptor Is Essential for Larval Epithelial Apoptosis and Adult Epithelial Stem Cell Development but Not Adult Intestinal Morphogenesis during Xenopus tropicalis Metamorphosis., Shibata Y., Cells. March 3, 2021; 10 (3):                             

Evolution of Somite Compartmentalization: A View From Xenopus., Della Gaspera B., Front Cell Dev Biol. January 1, 2021; 9 790847.                  

Thyroid hormone-induced expression of Foxl1 in subepithelial fibroblasts correlates with adult stem cell development during Xenopus intestinal remodeling., Hasebe T., Sci Rep. November 26, 2020; 10 (1): 20715.                

The critical role of dysregulated Hh-FOXM1-TPX2 signaling in human hepatocellular carcinoma cell proliferation., Wang Y., Cell Commun Signal. July 28, 2020; 18 (1): 116.              

Model systems for regeneration: Xenopus., Phipps LS., Development. March 19, 2020; 147 (6):           

Isl1 Regulation of Nkx2.1 in the Early Foregut Epithelium Is Required for Trachea-Esophageal Separation and Lung Lobation., Kim E., Dev Cell. December 16, 2019; 51 (6): 675-683.e4.          

Endosome-Mediated Epithelial Remodeling Downstream of Hedgehog-Gli Is Required for Tracheoesophageal Separation., Nasr T., Dev Cell. December 16, 2019; 51 (6): 665-674.e6.                  

Transcriptome profiling reveals male- and female-specific gene expression pattern and novel gene candidates for the control of sex determination and gonad development in Xenopus laevis., Piprek RP., Dev Genes Evol. May 1, 2019; 229 (2-3): 53-72.        

Stereoselective fatty acylation is essential for the release of lipidated WNT proteins from the acyltransferase Porcupine (PORCN)., Tuladhar R., J Biol Chem. April 19, 2019; 294 (16): 6273-6282.              

Xenopus slc7a5 is essential for notochord function and eye development., Katada T., Mech Dev. February 1, 2019; 155 48-59.                

WDR5 regulates left-right patterning via chromatin-dependent and -independent functions., Kulkarni SS., Development. November 28, 2018; 145 (23):                 

Evolutionarily conserved Tbx5-Wnt2/2b pathway orchestrates cardiopulmonary development., Steimle JD., Proc Natl Acad Sci U S A. November 6, 2018; 115 (45): E10615-E10624.                                  

Evolutionary Proteomics Uncovers Ancient Associations of Cilia with Signaling Pathways., Sigg MA., Dev Cell. December 18, 2017; 43 (6): 744-762.e11.      

Sonic hedgehog antagonists reduce size and alter patterning of the frog inner ear., Zarei S., Dev Neurobiol. December 1, 2017; 77 (12): 1385-1400.                

Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK., Dev Biol. June 15, 2017; 426 (2): 429-441.                    

Coordinating heart morphogenesis: A novel role for hyperpolarization-activated cyclic nucleotide-gated (HCN) channels during cardiogenesis in Xenopus laevis., Pitcairn E., Commun Integr Biol. May 10, 2017; 10 (3): e1309488.                            

The Sox transcriptional factors: Functions during intestinal development in vertebrates., Fu L., Semin Cell Dev Biol. March 1, 2017; 63 58-67.        

Genome evolution in the allotetraploid frog Xenopus laevis., Session AM., Nature. October 20, 2016; 538 (7625): 336-343.                              

Hedgehog-dependent E3-ligase Midline1 regulates ubiquitin-mediated proteasomal degradation of Pax6 during visual system development., Pfirrmann T., Proc Natl Acad Sci U S A. September 6, 2016; 113 (36): 10103-8.                    

A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification., Rankin SA, Rankin SA., Cell Rep. June 28, 2016; 16 (1): 66-78.                                              

Xenopus Limb bud morphogenesis., Keenan SR., Dev Dyn. March 1, 2016; 245 (3): 233-43.            

G protein-coupled receptors Flop1 and Flop2 inhibit Wnt/β-catenin signaling and are essential for head formation in Xenopus., Miyagi A., Dev Biol. November 1, 2015; 407 (1): 131-44.                                          

At new heights - endodermal lineages in development and disease., Ober EA., Development. June 1, 2015; 142 (11): 1912-1917.  

ATP4 and ciliation in the neuroectoderm and endoderm of Xenopus embryos and tadpoles., Walentek P., Data Brief. April 20, 2015; 4 22-31.            

A novel PKD2L1 C-terminal domain critical for trimerization and channel function., Zheng W., Sci Rep. January 12, 2015; 5 9460.              

A Molecular atlas of Xenopus respiratory system development., Rankin SA, Rankin SA., Dev Dyn. January 1, 2015; 244 (1): 69-85.                    

A requirement for hedgehog signaling in thyroid hormone-induced postembryonic intestinal remodeling., Wen L., Cell Biosci. January 1, 2015; 5 13.            

Hedgehog activity controls opening of the primary mouth., Tabler JM., Dev Biol. December 1, 2014; 396 (1): 1-7.            

Chibby functions in Xenopus ciliary assembly, embryonic development, and the regulation of gene expression., Shi J., Dev Biol. November 15, 2014; 395 (2): 287-98.                    

Gene regulatory networks governing lung specification., Rankin SA, Rankin SA., J Cell Biochem. August 1, 2014; 115 (8): 1343-50.

The chicken left right organizer has nonmotile cilia which are lost in a stage-dependent manner in the talpid(3) ciliopathy., Stephen LA., Genesis. June 1, 2014; 52 (6): 600-13.            

FoxA4 favours notochord formation by inhibiting contiguous mesodermal fates and restricts anterior neural development in Xenopus embryos., Murgan S., PLoS One. January 1, 2014; 9 (10): e110559.                              

Left-right patterning in Xenopus conjoined twin embryos requires serotonin signaling and gap junctions., Vandenberg LN., Int J Dev Biol. January 1, 2014; 58 (10-12): 799-809.                

Myb promotes centriole amplification and later steps of the multiciliogenesis program., Tan FE., Development. October 1, 2013; 140 (20): 4277-86.                

Thyroid hormone-induced cell-cell interactions are required for the development of adult intestinal stem cells., Hasebe T., Cell Biosci. April 1, 2013; 3 (1): 18.    

Islet1-expressing cardiac progenitor cells: a comparison across species., Pandur P., Dev Genes Evol. March 1, 2013; 223 (1-2): 117-29.          

Uncoupling VEGFA functions in arteriogenesis and hematopoietic stem cell specification., Leung A., Dev Cell. January 28, 2013; 24 (2): 144-58.                                

An intact brachyury function is necessary to prevent spurious axial development in Xenopus laevis., Aguirre CE., PLoS One. January 1, 2013; 8 (1): e54777.                                      

Suppression of Bmp4 signaling by the zinc-finger repressors Osr1 and Osr2 is required for Wnt/β-catenin-mediated lung specification in Xenopus., Rankin SA, Rankin SA., Development. August 1, 2012; 139 (16): 3010-20.                                                                                

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