Papers associated with mesoderm (and ventx2.2)

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	Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae., Goutam RS., Mol Cells. March 23, 2024; 47 (4): 100058.
	ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation., Wang C., EMBO Rep. February 1, 2024; 25 (2): 646-671.
	Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus., MacColl Garfinkel A., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.
	Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E., Nat Commun. November 5, 2022; 13 (1): 6681.
	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development., Rankin SA, Rankin SA., Dev Growth Differ. September 1, 2022; 64 (7): 347-361.
	Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z., Mol Cells. October 31, 2021; 44 (10): 723-735.
	Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula., Kumar V., Cells. October 17, 2021; 10 (10):
	The atypical RNA-binding protein Taf15 regulates dorsoanterior neural development through diverse mechanisms in Xenopus tropicalis., DeJong CS., Development. August 1, 2021; 148 (15):
	Smad2 and Smad3 differentially modulate chordin transcription via direct binding on the distal elements in gastrula Xenopus embryos., Kumar V., Biochem Biophys Res Commun. June 25, 2021; 559 168-175.
	TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis., Chen M., Elife. September 14, 2020; 9
	Natural size variation among embryos leads to the corresponding scaling in gene expression., Leibovich A., Dev Biol. June 15, 2020; 462 (2): 165-179.
	BAP1 regulates epigenetic switch from pluripotency to differentiation in developmental lineages giving rise to BAP1-mutant cancers., Kuznetsov JN., Sci Adv. September 18, 2019; 5 (9): eaax1738.
	Ventx1.1 competes with a transcriptional activator Xcad2 to regulate negatively its own expression., Kumar S, Kumar S., BMB Rep. June 1, 2019; 52 (6): 403-408.
	Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/β-Catenin response driving Spemann organizer formation., Sena E., Development. May 22, 2019; 146 (10):
	Leukemia inhibitory factor signaling in Xenopus embryo: Insights from gain of function analysis and dominant negative mutant of the receptor., Jalvy S., Dev Biol. March 15, 2019; 447 (2): 200-213.
	A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells., Buitrago-Delgado E., Dev Biol. December 15, 2018; 444 (2): 50-61.
	Histone deacetylase activity has an essential role in establishing and maintaining the vertebrate neural crest., Rao A., Development. August 8, 2018; 145 (15):
	A gene regulatory network underlying the formation of pre-placodal ectoderm in Xenopus laevis., Maharana SK., BMC Biol. July 16, 2018; 16 (1): 79.
	Tbx2 is required for the suppression of mesendoderm during early Xenopus development., Teegala S., Dev Dyn. July 1, 2018; 247 (7): 903-913.
	Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis., Rankin SA, Rankin SA., Dev Biol. February 1, 2018; 434 (1): 121-132.
	FGF mediated MAPK and PI3K/Akt Signals make distinct contributions to pluripotency and the establishment of Neural Crest., Geary L., Elife. January 19, 2018; 7
	Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2., Scerbo P., Elife. June 27, 2017; 6
	Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK., Dev Biol. June 15, 2017; 426 (2): 429-441.
	A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo., Blitz IL., Dev Biol. June 15, 2017; 426 (2): 409-417.
	Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition., Wagner G., PLoS Genet. May 12, 2017; 13 (5): e1006757.
	Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs., Stevens ML., Development. April 1, 2017; 144 (7): 1283-1295.
	Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling., Han W., Sci Rep. February 15, 2017; 7 42590.
	FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue., Polevoy H., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.
	Tril targets Smad7 for degradation to allow hematopoietic specification in Xenopus embryos., Green YS., Development. November 1, 2016; 143 (21): 4016-4026.
	Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1., Liu C., Dev Biol. January 1, 2016; 409 (1): 26-38.
	Notum is required for neural and head induction via Wnt deacylation, oxidation, and inactivation., Zhang X., Dev Cell. March 23, 2015; 32 (6): 719-30.
	The serpin PN1 is a feedback regulator of FGF signaling in germ layer and primary axis formation., Acosta H., Development. March 15, 2015; 142 (6): 1146-58.
	Sox5 Is a DNA-binding cofactor for BMP R-Smads that directs target specificity during patterning of the early ectoderm., Nordin K., Dev Cell. November 10, 2014; 31 (3): 374-382.
	Gtpbp2 is required for BMP signaling and mesoderm patterning in Xenopus embryos., Kirmizitas A., Dev Biol. August 15, 2014; 392 (2): 358-67.
	Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification., Yasuoka Y., Nat Commun. July 9, 2014; 5 4322.
	Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns., Zheng Z., BMC Syst Biol. January 8, 2014; 8 3.
	Early embryonic specification of vertebrate cranial placodes., Schlosser G., Wiley Interdiscip Rev Dev Biol. January 1, 2014; 3 (5): 349-63.
	Zygotic expression of Exostosin1 (Ext1) is required for BMP signaling and establishment of dorsal-ventral pattern in Xenopus., Shieh YE., Int J Dev Biol. January 1, 2014; 58 (1): 27-34.
	In vivo T-box transcription factor profiling reveals joint regulation of embryonic neuromesodermal bipotency., Gentsch GE., Cell Rep. September 26, 2013; 4 (6): 1185-96.
	Different thresholds of Wnt-Frizzled 7 signaling coordinate proliferation, morphogenesis and fate of endoderm progenitor cells., Zhang Z., Dev Biol. June 1, 2013; 378 (1): 1-12.
	Klf4 is required for germ-layer differentiation and body axis patterning during Xenopus embryogenesis., Cao Q., Development. November 1, 2012; 139 (21): 3950-61.
	Microarray-based identification of Pitx3 targets during Xenopus embryogenesis., Hooker L., Dev Dyn. September 1, 2012; 241 (9): 1487-505.
	Xmab21l3 mediates dorsoventral patterning in Xenopus laevis., Sridharan J., Mech Dev. July 1, 2012; 129 (5-8): 136-46.
	A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus., Szenker E., Cell Rep. June 28, 2012; 1 (6): 730-40.
	TAK1 promotes BMP4/Smad1 signaling via inhibition of erk MAPK: a new link in the FGF/BMP regulatory network., Liu C., Differentiation. April 1, 2012; 83 (4): 210-9.
	Xenopus staufen2 is required for anterior endodermal organ formation., Bilogan CK., Genesis. March 1, 2012; 50 (3): 251-9.
	KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins., Matsukawa S., Int J Dev Biol. January 1, 2012; 56 (5): 351-6.
	mNanog possesses dorsal mesoderm-inducing ability by modulating both BMP and Activin/nodal signaling in Xenopus ectodermal cells., Miyazaki A., PLoS One. January 1, 2012; 7 (10): e46630.
	Conservation and diversification of an ancestral chordate gene regulatory network for dorsoventral patterning., Kozmikova I., PLoS One. February 3, 2011; 6 (2): e14650.

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