Papers associated with endoderm (and otx2)

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	The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.
	Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K., BMC Genomics. October 23, 2022; 23 (1): 723.
	Modeling human congenital disorders with neural crest developmental defects using patient-derived induced pluripotent stem cells., Okuno H., Regen Ther. August 24, 2021; 18 275-280.
	Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR., EMBO J. May 3, 2021; 40 (9): e104913.
	Furry is required for cell movements during gastrulation and functionally interacts with NDR1., Cervino AS., Sci Rep. March 23, 2021; 11 (1): 6607.
	Dusp1 modulates activin/smad2 mediated germ layer specification via FGF signal inhibition in Xenopus embryos., Umair Z., Anim Cells Syst (Seoul). November 27, 2020; 24 (6): 359-370.
	Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S., Elife. September 7, 2020; 9
	Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus., Yasuoka Y., Zoological Lett. August 2, 2019; 5 27.
	Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.
	Leukemia inhibitory factor signaling in Xenopus embryo: Insights from gain of function analysis and dominant negative mutant of the receptor., Jalvy S., Dev Biol. March 15, 2019; 447 (2): 200-213.
	WDR5 regulates left-right patterning via chromatin-dependent and -independent functions., Kulkarni SS., Development. November 28, 2018; 145 (23):
	Bighead is a Wnt antagonist secreted by the Xenopus Spemann organizer that promotes Lrp6 endocytosis., Ding Y., Proc Natl Acad Sci U S A. September 25, 2018; 115 (39): E9135-E9144.
	RAPGEF5 Regulates Nuclear Translocation of β-Catenin., Griffin JN., Dev Cell. January 22, 2018; 44 (2): 248-260.e4.
	Maternal Gdf3 is an obligatory cofactor in Nodal signaling for embryonic axis formation in zebrafish., Bisgrove BW., Elife. November 15, 2017; 6
	A Nonredundant Role for the TRPM6 Channel in Neural Tube Closure., Komiya Y., Sci Rep. November 15, 2017; 7 (1): 15623.
	A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates., Plouhinec JL., PLoS Biol. October 19, 2017; 15 (10): e2004045.
	Mouth development., Chen J., Wiley Interdiscip Rev Dev Biol. September 1, 2017; 6 (5):
	The phosphatase Pgam5 antagonizes Wnt/β-Catenin signaling in embryonic anterior-posterior axis patterning., Rauschenberger V., Development. June 15, 2017; 144 (12): 2234-2247.
	A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
	Tbx3 represses bmp4 expression and, with Pax6, is required and sufficient for retina formation., Motahari Z., Development. October 1, 2016; 143 (19): 3560-3572.
	Specification of anteroposterior axis by combinatorial signaling during Xenopus development., Carron C., Wiley Interdiscip Rev Dev Biol. January 1, 2016; 5 (2): 150-68.
	Xenopus Pkdcc1 and Pkdcc2 Are Two New Tyrosine Kinases Involved in the Regulation of JNK Dependent Wnt/PCP Signaling Pathway., Vitorino M., PLoS One. August 13, 2015; 10 (8): e0135504.
	The serpin PN1 is a feedback regulator of FGF signaling in germ layer and primary axis formation., Acosta H., Development. March 15, 2015; 142 (6): 1146-58.
	PV.1 induced by FGF-Xbra functions as a repressor of neurogenesis in Xenopus embryos., Yoon J., BMB Rep. December 1, 2014; 47 (12): 673-8.
	An essential role for LPA signalling in telencephalon development., Geach TJ., Development. February 1, 2014; 141 (4): 940-9.
	Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns., Zheng Z., BMC Syst Biol. January 8, 2014; 8 3.
	FoxA4 favours notochord formation by inhibiting contiguous mesodermal fates and restricts anterior neural development in Xenopus embryos., Murgan S., PLoS One. January 1, 2014; 9 (10): e110559.
	Zygotic expression of Exostosin1 (Ext1) is required for BMP signaling and establishment of dorsal-ventral pattern in Xenopus., Shieh YE., Int J Dev Biol. January 1, 2014; 58 (1): 27-34.
	The Xenopus homologue of Down syndrome critical region protein 6 drives dorsoanterior gene expression and embryonic axis formation by antagonising polycomb group proteins., Li HY., Development. December 1, 2013; 140 (24): 4903-13.
	sox4 and sox11 function during Xenopus laevis eye development., Cizelsky W., PLoS One. July 1, 2013; 8 (7): e69372.
	Suv4-20h histone methyltransferases promote neuroectodermal differentiation by silencing the pluripotency-associated Oct-25 gene., Nicetto D., PLoS Genet. January 1, 2013; 9 (1): e1003188.
	A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus., Szenker E., Cell Rep. June 28, 2012; 1 (6): 730-40.
	Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer., Sudou N., Development. May 1, 2012; 139 (9): 1651-61.
	Transcription factors involved in lens development from the preplacodal ectoderm., Ogino H., Dev Biol. March 15, 2012; 363 (2): 333-47.
	xCITED2 Induces Neural Genes in Animal Cap Explants of Xenopus Embryos., Yoon J., Exp Neurobiol. September 1, 2011; 20 (3): 123-9.
	A gene regulatory network controlling hhex transcription in the anterior endoderm of the organizer., Rankin SA, Rankin SA., Dev Biol. March 15, 2011; 351 (2): 297-310.
	SNW1 is a critical regulator of spatial BMP activity, neural plate border formation, and neural crest specification in vertebrate embryos., Wu MY., PLoS Biol. February 15, 2011; 9 (2): e1000593.
	Evolutionary origin of the Otx2 enhancer for its expression in visceral endoderm., Kurokawa D., Dev Biol. June 1, 2010; 342 (1): 110-20.
	Neural crest migration requires the activity of the extracellular sulphatases XtSulf1 and XtSulf2., Guiral EC., Dev Biol. May 15, 2010; 341 (2): 375-88.
	Xenopus SMOC-1 Inhibits bone morphogenetic protein signaling downstream of receptor binding and is essential for postgastrulation development in Xenopus., Thomas JT., J Biol Chem. July 10, 2009; 284 (28): 18994-9005.
	Crossveinless-2 Is a BMP feedback inhibitor that binds Chordin/BMP to regulate Xenopus embryonic patterning., Ambrosio AL., Dev Cell. August 1, 2008; 15 (2): 248-60.
	The role of FGF signaling in the establishment and maintenance of mesodermal gene expression in Xenopus., Fletcher RB., Dev Dyn. May 1, 2008; 237 (5): 1243-54.
	Expression of Siamois and Twin in the blastula Chordin/Noggin signaling center is required for brain formation in Xenopus laevis embryos., Ishibashi H., Mech Dev. January 1, 2008; 125 (1-2): 58-66.
	The opposing homeobox genes Goosecoid and Vent1/2 self-regulate Xenopus patterning., Sander V., EMBO J. June 20, 2007; 26 (12): 2955-65.
	Mouse homologues of Shisa antagonistic to Wnt and Fgf signalings., Furushima K., Dev Biol. June 15, 2007; 306 (2): 480-92.
	The competence of Xenopus blastomeres to produce neural and retinal progeny is repressed by two endo-mesoderm promoting pathways., Yan B., Dev Biol. May 1, 2007; 305 (1): 103-19.
	Evolution of axis specification mechanisms in jawed vertebrates: insights from a chondrichthyan., Coolen M., PLoS One. April 18, 2007; 2 (4): e374.
	Characterization of myeloid cells derived from the anterior ventral mesoderm in the Xenopus laevis embryo., Tashiro S., Dev Growth Differ. October 1, 2006; 48 (8): 499-512.
	Novel gene ashwin functions in Xenopus cell survival and anteroposterior patterning., Patil SS., Dev Dyn. July 1, 2006; 235 (7): 1895-907.
	A Serpin family gene, protease nexin-1 has an activity distinct from protease inhibition in early Xenopus embryos., Onuma Y., Mech Dev. June 1, 2006; 123 (6): 463-71.

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