Xenbase Image ID: 130690

Figure 7. Expression analysis of putative long non-coding RNAs (NGM-vvo).(a) Boxplot to show log transformed expression (RPKM, PolyA+) across six developmental stages in the NGM-vvo subset. (b) Density graph to compare stage-9 expression (RPKM, PolyA+) between all gene models (GM) and NGM-vvo subset. (c) Heat map to show unsupervised hierarchical clustering of expression (RPKM) of polyA+ and RZ data across embryogenesis. Colorscale represents deviation from mean expression calculated row-wise. (d) Density plot to compare distribution of log10 transformed conservation score (phastCons analysis, see Materials and methods) between random genomic sequences (Genomic Seq), Xenbase extracted X.tropicalis mRNAs (X.trop mRNA) and NGM-vvo subset. PolyA+(RNA harvested with double polyA+ selection), RZ (ribosomal rRNA depleted-total RNA). Image published in: Paranjpe SS et al. (2013) Copyright © 2013 Paranjpe et al. This image is reproduced with permission of the journal and the copyright holder. This is an open-access article distributed under the terms of the Creative Commons Attribution license Larger Image Printer Friendly View

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