Xenbase Image ID: 173508

Fig 2. Graphical depiction of image analysis workflow for selected images with different shape embryos and a range of different background colours and textures. Images show that embryo detection and stain colour analysis is effective independently of a wide range of variation in image background and embryo characteristics. All images were analysed without changing initial parameters. Note image (d) where even the human eye struggles to distinguish the upper border of the embryo from the background. https://doi.org/10.1371/journal.pcbi.1006077.g002 Image published in: Patrushev I et al. (2018) © 2018 Patrushev et al. This image is reproduced with permission of the journal and the copyright holder. This is an open-access article distributed under the terms of the Creative Commons Attribution license Gene Synonyms Species Stage(s) Tissue nrarp.S LOC108698141, XNAP X. laevis Sometime during NF stage 1 to NF stage 40 tail bud olfactory placode forebrain midbrain hindbrain tail tip spinal cord tail somite cranial placode neurogenic placode epibranchial placode slc12a3l.L LOC108695638, ncct, scl12a3l, slc12a3-like, slc12a3.2 X. laevis Throughout NF stage 26 pharyngeal region post-anal gut midgut alimentary system meis1.L XMeis1 X. laevis Sometime during NF stage 1 to NF stage 40 brain somite eye epibranchial placode presomitic mesoderm spinal cord pharyngeal region lateral plate mesoderm intermediate mesoderm tbxt.L bra, brachyury, ntl, t, t-a, t-b, X-bra, Xbra, Xbrachyury X. laevis Throughout NF stage 9 marginal zone prdm1.L blimp1, xblimp1 X. laevis Sometime during NF stage 1 to NF stage 40 chordal neural plate border chordal neural plate pre-chordal neural plate border paraxial mesoderm cranial placode Image source: Published Larger Image Printer Friendly View

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