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XB-IMG-82031

Xenbase Image ID: 82031


Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 6

Image published in: Gawantka V et al. (1998)

Copyright © 1998. Image reproduced on Xenbase with permission of the Publisher, Elsevier B. V.

GeneCloneSynonymsSpeciesStage(s)Tissue
eif4g2.S11B5p97, nat1, dap5X.laevisThroughout NF stage 29 and 30central nervous system
spinal cord
atp5mc3.L10E9cg1746, atp5g3X.laevisThroughout NF stage 29 and 30somite
epaxial muscle
muscle
skeletal muscle
prelid1.S10E5X.laevisSometime during NF stage 10.5 to NF stage 29 and 30epidermis
eif3b.L10A8prt1, eif3s9, eif3-eta, eif3-p110, eif3-p116X.laevisThroughout NF stage 29 and 30spinal cord
head
rcor2.L10A5XCoRESTX.laevisSometime during NF stage 13 to NF stage 29 and 30central nervous system
spinal cord
brain
forebrain
midbrain
hindbrain
neural plate
adenohypophyseal placode
cdknx.S11D1Xic-1, Xic1, p27XIC1, p28, p27Xic-1X.laevisSometime during NF stage 13 to NF stage 29 and 30paraxial mesoderm
myocyte
lbh.L10D1xlcl2X.laevisSometime during NF stage 13 to NF stage 29 and 30heart
hes5.5.S11A10esr10X.laevisSometime during NF stage 13 to NF stage 29 and 30adenohypophyseal placode
brain
hindbrain
midbrain
cranial placode
eye
neural plate border
sec61g.L sss1, sec61g-a, sec61g-bX.laevisSometime during NF stage 13 to NF stage 29 and 30anterior neural ridge
cement gland primordium
cement gland
spinal cord
hes6.1.S XHes6, Xhes-6X.laevisSometime during NF stage 10.5 to NF stage 29 and 30brain
tail bud
blvra.L X.laevisSometime during NF stage 13 to NF stage 29 and 30mesoderm
blood vessel
blood

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