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XB-IMG-82039

Xenbase Image ID: 82039


Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 14

Image published in: Gawantka V et al. (1998)

Copyright © 1998. Image reproduced on Xenbase with permission of the Publisher, Elsevier B. V.

GeneCloneSynonymsSpeciesStage(s)Tissue
eef2.1.L21C8-2ef2, eef-2X.laevisThroughout NF stage 29 and 30 
higd1a.L21C3-2hig1, yghl1, higd1a-b, higd1a-aX.laevisThroughout NF stage 29 and 30somite
epaxial muscle
cycs.S21C1-2X.laevisThroughout NF stage 29 and 30pronephric kidney
pronephric nephron
pronephric tubule
somite
epaxial muscle
ckb.L20G3-1b-ck, ckbb, XCK1X.laevisThroughout NF stage 29 and 30somite
epaxial muscle
heart
muscle
hal.1.L20C3-2xhal, histidine ammonia-lyase, hstd, HAL1X.laevisSometime during NF stage 10.5 to NF stage 29 and 30 
sox2.S19F1-1XLSOX-2, Sox-2, XSox2, Xsox-2, anop3, mcops3X.laevisSometime during NF stage 10.5 to NF stage 29 and 30central nervous system
brain
spinal cord
eye
neural plate
stard10.L2-22X.laevisSometime during NF stage 13 to NF stage 29 and 30 
tuba4b.L21D9-1tuba4, alpha tubulin, alpha-tubulin, tuba4aX.laevisSometime during NF stage 10.5 to NF stage 29 and 30 
tbxt.S20E9-2Xbra, X-bra, bra, Xbrachyury, brachyury, ntl, t-a, t-b, tX.laevisSometime during NF stage 10.5 to NF stage 29 and 30mesoderm
tail bud
involuted dorsal mesoderm
involuted ventral mesoderm
cd81.L s5.7, tapa1, tspan28, cd81-a, cd81-bX.laevisSometime during NF stage 13 to NF stage 29 and 30 

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