Xenbase Image ID: 82039

Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 14 Image published in: Gawantka V et al. (1998) Copyright © 1998. Image reproduced with permission of the Publisher, Elsevier B. V. Gene Synonyms Species Stage(s) Tissue sox2.L anop3, LOC108718087, mcops3, Sox-2, XLSOX-2, Xsox-2, XSox2 X. laevis Sometime during NF stage 10.5 to NF stage 29 and 30 central nervous system brain spinal cord eye neural plate stard10.L X. laevis Sometime during NF stage 13 to NF stage 29 and 30   hal.1.L HAL1, histidine ammonia-lyase, hstd, xhal X. laevis Sometime during NF stage 10.5 to NF stage 29 and 30   tbxt.S bra, brachyury, ntl, t, t-a, t-b, X-bra, Xbra, Xbrachyury X. laevis Sometime during NF stage 10.5 to NF stage 29 and 30 mesoderm tail bud involuted dorsal mesoderm involuted ventral mesoderm ckb.L b-ck, ckbb, XCK1 X. laevis Throughout NF stage 29 and 30 somite epaxial muscle heart muscle cycs.S X. laevis Throughout NF stage 29 and 30 pronephric kidney pronephric nephron pronephric tubule somite epaxial muscle higd1a.L higd1a-a, higd1a-b, yghl1 X. laevis Throughout NF stage 29 and 30 somite epaxial muscle eef2.1.L ef2 X. laevis Throughout NF stage 29 and 30   tuba4b.L alpha tubulin, alpha-tubulin, tuba4, tuba4a X. laevis Sometime during NF stage 10.5 to NF stage 29 and 30   cd81.L cd81-a, cd81-b, s5.7, tapa1, tspan28 X. laevis Sometime during NF stage 13 to NF stage 29 and 30   Image source: Published Larger Image Printer Friendly View

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