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XB-IMG-82043

Xenbase Image ID: 82043


Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 18

Image published in: Gawantka V et al. (1998)

Copyright © 1998. Image reproduced with permission of the Publisher, Elsevier B. V.

GeneSynonymsSpeciesStage(s)Tissue
pnhd.LpinheadX.laevisSometime during NF stage 13 to NF stage 29 and 30 
nop56.Lnol5a, XNop56X.laevisThroughout NF stage 29 and 30 
arl6ip1.LX.laevisThroughout NF stage 29 and 30 
ppdpf.Sc20orf149, exdpf, ppdpf-b, ppdpf-aX.laevisThroughout NF stage 29 and 30 
adam33.Ladam13, x-adam 13X.laevisSometime during NF stage 13 to NF stage 29 and 30 
sec61b.Lsec61betaX.laevisSometime during NF stage 13 to NF stage 29 and 30 
hsp90b1.Lgrp94, ecgp, gp96, tra1X.laevisThroughout NF stage 29 and 30hatching gland
vdac2.SX.laevisThroughout NF stage 29 and 30 
itln1.Llfr, hl-1, intl, itln, omentin, xeel, hl1X.laevisSometime during NF stage 13 to NF stage 29 and 30 
krt7.Lxck55, ck55, krt5.7X.laevisSometime during NF stage 13 to NF stage 29 and 30 
pax3.Lpax-3, Waardenburg syndrome 1, xpax3, pax3-a, pax3-b, ws1, cdhs, hup2X.laevisSometime during NF stage 13 to NF stage 29 and 30 
hnrnpa2b1.Shnrpa2b1, rnpa2, hnrpb1, hnrpa2, snrpb1, hnrnpa2, hnrnpb1X.laevisThroughout NF stage 29 and 30 

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