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XB-IMG-82045

Xenbase Image ID: 82045


Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 20

Image published in: Gawantka V et al. (1998)

Copyright © 1998. Image reproduced on Xenbase with permission of the Publisher, Elsevier B. V.

GeneCloneSynonymsSpeciesStage(s)Tissue
nucks1.S27G8-2JC7, nucksX.laevisThroughout NF stage 29 and 30 
efnb2.S27E8-2ephrinB2, ephrin B2, efnb2-a, efnb2-b, Xefnb2X.laevisSometime during NF stage 13 to NF stage 29 and 30 
copz1.L27D11-2copz, zeta1-copX.laevisThroughout NF stage 29 and 30 
nop58.S27D3-1nop5/nop58, nop5, nop58-a, nop58-bX.laevisSometime during NF stage 13 to NF stage 29 and 30 
hmgb2.L27C9-2HMG-X, MGC52578X.laevisThroughout NF stage 29 and 30 
lsp1.S27C3-2pp52, WP34X.laevisSometime during NF stage 13 to NF stage 29 and 30 
pnrc2.S26H2-1pnrc2-a, pnrc2-bX.laevisSometime during NF stage 13 to NF stage 29 and 30 
loc100497556.S26G7-2MGC81939X.laevisThroughout NF stage 29 and 30 
cdk4.S27G10-2xcdk4X.laevisThroughout NF stage 29 and 30 
myf5.L Xmyf5, Xmyf-5, myf-5X.laevisSometime during NF stage 10.5 to NF stage 29 and 30myoblast
frzb.L Frzb-1, xfrzb, fre, os1, fzrb, fiz, frp-3, frzb1, sfrp3, srfp3, frzb-penX.laevisSometime during NF stage 13 to NF stage 29 and 30 
slc25a20.S cac, cact, dif-1X.laevisThroughout NF stage 29 and 30 

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