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XB-IMG-82046

Xenbase Image ID: 82046


Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 21

Image published in: Gawantka V et al. (1998)

Copyright © 1998. Image reproduced with permission of the Publisher, Elsevier B. V.

GeneSynonymsSpeciesStage(s)Tissue
canx.Lcalnexin, cnx, clnx, canx-a, canx-bX.laevisSometime during NF stage 13 to NF stage 29 and 30 
dhcr7.LXdhcr7, 7-DhcrX.laevisSometime during NF stage 13 to NF stage 29 and 30 
nucks1.LJC7, nucksX.laevisThroughout NF stage 29 and 30 
hes6.1.LXHes6, Xhes-6X.laevisSometime during NF stage 13 to NF stage 29 and 30 
sec61a1.Ssec61, sec61a, sec61alphaX.laevisThroughout NF stage 29 and 30 
cyp26a1.SxCYP26, XCYP26A1, cyp26, RACE, retinoic acid converting enzymeX.laevisSometime during NF stage 10.5 to NF stage 29 and 30 
hnrnpa1.ShnRNP A1, hnrpa1X.laevisThroughout NF stage 29 and 30 
krt8.1.Skeratin8, XCK1, CK1, krt8X.laevisSometime during NF stage 10.5 to NF stage 29 and 30 
aldoa.SX.laevisSometime during NF stage 13 to NF stage 29 and 30 
myl1.LXMLC1f, XMLC3f, MLC1f, MLC3f, MLC1f/3f, XmlcX.laevisSometime during NF stage 13 to NF stage 29 and 30somite
presomitic mesoderm
paraxial mesoderm
epaxial muscle
heart

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