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XB-IMG-82049

Xenbase Image ID: 82049


Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 24

Image published in: Gawantka V et al. (1998)

Copyright © 1998. Image reproduced with permission of the Publisher, Elsevier B. V.

GeneSynonymsSpeciesStage(s)Tissue
spint2.STrineinX.laevisThroughout NF stage 29 and 30hatching gland
rhou.Lwrch1, wrch-1, xg28k, arhu, cdc42l1, WrchX.laevisSometime during NF stage 10.5 to NF stage 29 and 30 
hnrnpab.L40LoVeX.laevisThroughout NF stage 29 and 30 
marcks.S80k-l, pkcsl, prkcslX.laevisThroughout NF stage 29 and 30 
nap1l1.Snap1, xnap1l, xnap1l1, xNAP-1, nap1l1-a, nap1l1-bX.laevisThroughout NF stage 29 and 30 
ptma.Ltmsa, thymosin alpha1, ptma-a, ptma-bX.laevisThroughout NF stage 29 and 30 
tpt1.LtctpX.laevisThroughout NF stage 29 and 30 
upk3a.Luroplakin III, up3a, upk3, upiii, upiiia, xUPIIIX.laevisSometime during NF stage 10.5 to NF stage 29 and 30 
actl6a.SBaf53a, arp4, actl6, ino80k, arpn-betaX.laevisThroughout NF stage 29 and 30 
rilpl1.LX.laevisThroughout NF stage 29 and 30 

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