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XB-IMG-82051

Xenbase Image ID: 82051


Fig. 3. Whole mount in situ hybridizations, sequence similarities and functional classifications. The left-most part represents the results of sequence similarity searches from 273 partially sequenced cDNAs representing unique, differentially expressed genes: clone name; accession number of best hit, P-value; name of best hit; functional classification. The order of the genes follows first digit sorting, e.g. 1, 10, 2, 20 etc. Abbreviations: o, orphan genes; m, metabolism gene; r, developmental regulator gene; r?, housekeeping regulator gene; s, structural gene; Xl, known Xenopus gene; +, GRAIL1 good coding potential; ++, GRAIL1 excellent coding potential. The P-value is the probability provided by the BLAST programme and calculated using Karlinltschul statistics, that the sequence similarity is due to randomness. For EST hits, the similarities derived from the comparison of the EST or cluster of EST sequences is given. The right-most part shows in situ hybridizations results for stages 10+, 13 and 30. Abbreviations are: a, animal view (stage 10); a, anterior view (stage 30); d, dorsal view; l, lateral view; p, posterior view; s, sagittal section; t, transverse section; v, vegetal view (stage 10); v, ventral view (stage 30). page 26

Image published in: Gawantka V et al. (1998)

Copyright © 1998. Image reproduced on Xenbase with permission of the Publisher, Elsevier B. V.

GeneCloneSynonymsSpeciesStage(s)Tissue
atp6v0c.L6A21atpl, vatl, vma3, atp6c, atp6l, ductin, xductX.laevisSometime during NF stage 13 to NF stage 29 and 30 
marcksl1.S6A5XMLPX.laevisSometime during NF stage 13 to NF stage 29 and 30 
rbm28.L5L4X.laevisThroughout NF stage 29 and 30 
hnrnpk.S5J20hnrpkX.laevisThroughout NF stage 29 and 30 
sfpq.S5J17psf, pomp100, loc654780X.laevisThroughout NF stage 29 and 30 
id2.L5I4xid2X.laevisThroughout NF stage 29 and 30 
krt70.S6B7xk70, krt-a, krt-bX.laevisSometime during NF stage 10.5 to NF stage 29 and 30ectoderm
epidermis
non-neural ectoderm
ccnb1.2.L5N19ccnb, cyclin B, CcnBX.laevisSometime during NF stage 10.5 to NF stage 29 and 30 
cox7c.S5O8cox7c-b, cox7c-aX.laevisSometime during NF stage 13 to NF stage 29 and 30 
rhebl1.L mgc75978, rhebl1cX.laevisSometime during NF stage 13 to NF stage 29 and 30 
rps20.L X.laevisThroughout NF stage 29 and 30 

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