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Profile Publications(6)
XB-PERS-2300

Publications By Kamran Karimi

Results 1 - 6 of 6 results

Page(s): 1

Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD.
Nucleic Acids Res. October 20, 2017;

Genome evolution in the allotetraploid frog Xenopus laevis.
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.
Nature. October 20, 2016; 538 (7625): 336-343.

Database and Informatic Challenges in Representing Both Diploid and Tetraploid Xenopus Species in Xenbase.
Vize PD, Liu Y, Karimi K.
Cytogenet Genome Res. October 12, 2016; .

Xenbase: Core features, data acquisition, and data processing.
James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Brad Karpinka J, Karimi K, Zorn AM, Vize PD.
Genesis. August 1, 2015; 53 (8): 486-97.

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.
Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD.
Nucleic Acids Res. January 1, 2015; 43 (Database issue): D756-63.

The Virtual Xenbase: transitioning an online bioinformatics resource to a private cloud.
Karimi K, Vize PD.
Database (Oxford). January 1, 2014; 2014

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