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Profile Publications(37)
XB-PERS-698

Publications By Gert Jan C. Veenstra

Results 1 - 20 of 37 results

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Heterochromatic histone modifications at transposons in Xenopus tropicalis embryos.
van Kruijsbergen I, Hontelez S, Elurbe DM, van Heeringen SJ, Huynen MA, Veenstra GJC.
Dev Biol. June 15, 2017; 426 (2): 460-471.

Genomic organization and modulation of gene expression of the TGF-β and FGF pathways in the allotetraploid frog Xenopus laevis.
Suzuki A, Yoshida H, van Heeringen SJ, Takebayashi-Suzuki K, Veenstra GJC, Taira M.
Dev Biol. June 15, 2017; 426 (2): 336-359.

Genome evolution in the allotetraploid frog Xenopus laevis.
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.
Nature. October 20, 2016; 538 (7625): 336-343.

The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification.
Hatch VL, Marin-Barba M, Moxon S, Ford CT, Ward NJ, Tomlinson ML, Desanlis I, Hendry AE, Hontelez S, van Kruijsbergen I, Veenstra GJ, Münsterberg AE, Wheeler GN.
Dev Biol. August 15, 2016; 416 (2): 361-72.

Tissue- and stage-specific Wnt target gene expression is controlled subsequent to β-catenin recruitment to cis-regulatory modules.
Nakamura Y, de Paiva Alves E, Veenstra GJ, Hoppler S.
Development. June 1, 2016; 143 (11): 1914-25.

Activation of a T-box-Otx2-Gsc gene network independent of TBP and TBP-related factors.
Gazdag E, Jacobi UG, van Kruijsbergen I, Weeks DL, Veenstra GJ.
Development. April 15, 2016; 143 (8): 1340-50.

Active DNA demethylation at enhancers during the vertebrate phylotypic period.
Bogdanović O, Smits AH, de la Calle Mustienes E, Tena JJ, Ford E, Williams R, Senanayake U, Schultz MD, Hontelez S, van Kruijsbergen I, Rayon T, Gnerlich F, Carell T, Veenstra GJ, Manzanares M, Sauka-Spengler T, Ecker JR, Vermeulen M, Gómez-Skarmeta JL, Lister R.
Nat Genet. April 1, 2016; 48 (4): 417-26.

Embryonic transcription is controlled by maternally defined chromatin state.
Hontelez S, van Kruijsbergen I, Georgiou G, van Heeringen SJ, Bogdanovic O, Lister R, Veenstra GJ.
Nat Commun. June 23, 2015; 6 10148.

Establishing pluripotency in early development.
Paranjpe SS, Veenstra GJ.
Biochim Biophys Acta. June 1, 2015; 1849 (6): 626-36.

Global absolute quantification reveals tight regulation of protein expression in single Xenopus eggs.
Smits AH, Lindeboom RG, Perino M, van Heeringen SJ, Veenstra GJ, Vermeulen M.
Nucleic Acids Res. September 1, 2014; 42 (15): 9880-91.

Principles of nucleation of H3K27 methylation during embryonic development.
van Heeringen SJ, Akkers RC, van Kruijsbergen I, Arif MA, Hanssen LL, Sharifi N, Veenstra GJ.
Genome Res. March 1, 2014; 24 (3): 401-10.

A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development.
Paranjpe SS, Jacobi UG, van Heeringen SJ, Veenstra GJ.
BMC Genomics. May 28, 2013; 14 762.

The Wnt signaling mediator tcf1 is required for expression of foxd3 during Xenopus gastrulation.
Janssens S, Van Den Broek O, Davenport IR, Akkers RC, Liu F, Veenstra GJ, Hoppler S, Vleminckx K, Destrée O.
Int J Dev Biol. January 1, 2013; 57 (1): 49-54.

Tet3 CXXC domain and dioxygenase activity cooperatively regulate key genes for Xenopus eye and neural development.
Xu Y, Xu C, Kato A, Tempel W, Abreu JG, Bian C, Hu Y, Hu D, Zhao B, Cerovina T, Diao J, Wu F, He HH, Cui Q, Clark E, Ma C, Barbara A, Veenstra GJ, Xu G, Kaiser UB, Liu XS, Sugrue SP, He X, Min J, Kato Y, Shi YG.
Cell. December 7, 2012; 151 (6): 1200-13.

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis.
Bogdanovic O, Fernandez-Miñán A, Tena JJ, de la Calle-Mustienes E, Hidalgo C, van Kruysbergen I, van Heeringen SJ, Veenstra GJ, Gómez-Skarmeta JL.
Genome Res. October 1, 2012; 22 (10): 2043-53.

The epigenome in early vertebrate development.
Bogdanović O, van Heeringen SJ, Veenstra GJ.
Genesis. March 1, 2012; 50 (3): 192-206.

Chromatin immunoprecipitation analysis of Xenopus embryos.
Akkers RC, Jacobi UG, Veenstra GJ.
Methods Mol Biol. January 1, 2012; 917 279-92.

Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.
Bogdanovic O, Long SW, van Heeringen SJ, Brinkman AB, Gómez-Skarmeta JL, Stunnenberg HG, Jones PL, Veenstra GJ.
Genome Res. August 1, 2011; 21 (8): 1313-27.

Affinity-based enrichment strategies to assay methyl-CpG binding activity and DNA methylation in early Xenopus embryos.
Bogdanović O, Veenstra GJ.
BMC Res Notes. May 6, 2011; 4 300.

Nucleotide composition-linked divergence of vertebrate core promoter architecture.
van Heeringen SJ, Akhtar W, Jacobi UG, Akkers RC, Suzuki Y, Veenstra GJ.
Genome Res. March 1, 2011; 21 (3): 410-21.

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