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Profile Publications(89)

Publications By John B. Wallingford

Results 1 - 50 of 89 results

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A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating machinery., Drew K, Lee C, Cox RM, Dang V, Devitt CC, McWhite CD, Papoulas O, Huizar RL, Marcotte EM, Wallingford JB., Dev Biol. September 5, 2020;

PCP-dependent transcellular regulation of actomyosin oscillation facilitates convergent extension of vertebrate tissue., Shindo A, Inoue Y, Kinoshita M, Wallingford JB., Dev Biol. January 1, 2019; 446 (2): 159-167.        

May the force be with you., Weng S, Wallingford JB., Elife. January 1, 2018; 7   

Septin-dependent remodeling of cortical microtubule drives cell reshaping during epithelial wound healing., Shindo A, Audrey A, Takagishi M, Takahashi M, Wallingford JB, Kinoshita M., J Cell Sci. January 1, 2018; 131 (12):

Spatial and temporal analysis of PCP protein dynamics during neural tube closure., Butler MT, Wallingford JB., Elife. January 1, 2018; 7                                     

Mutations in Kinesin family member 6 reveal specific role in ependymal cell ciliogenesis and human neurological development., Konjikusic MJ, Yeetong P, Boswell CW, Lee C, Roberson EC, Ittiwut R, Suphapeetiporn K, Ciruna B, Gurnett CA, Wallingford JB, Shotelersuk V, Gray RS., PLoS Genet. January 1, 2018; 14 (11): e1007817.              

A liquid-like organelle at the root of motile ciliopathy., Huizar RL, Lee C, Boulgakov AA, Horani A, Tu F, Marcotte EM, Brody SL, Wallingford JB., Elife. January 1, 2018; 7                             

Protein localization screening in vivo reveals novel regulators of multiciliated cell development and function., Tu F, Sedzinski J, Ma Y, Marcotte EM, Wallingford JB., J Cell Sci. January 1, 2018; 131 (3):             

Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes., Drew K, Lee C, Huizar RL, Tu F, Borgeson B, McWhite CD, Ma Y, Wallingford JB, Marcotte EM., Mol Syst Biol. June 8, 2017; 13 (6): 932.                        

Identification of new regulators of embryonic patterning and morphogenesis in Xenopus gastrulae by RNA sequencing., Popov IK, Kwon T, Crossman DK, Crowley MR, Wallingford JB, Chang C., Dev Biol. January 1, 2017; 426 (2): 429-441.                    

RhoA regulates actin network dynamics during apical surface emergence in multiciliated epithelial cells., Sedzinski J, Hannezo E, Tu F, Biro M, Wallingford JB., J Cell Sci. January 1, 2017; 130 (2): 420-428.                

Folate-dependent methylation of septins governs ciliogenesis during neural tube closure., Toriyama M, Toriyama M, Wallingford JB, Finnell RH., FASEB J. January 1, 2017; 31 (8): 3622-3635.                    

Compound heterozygous alterations in intraflagellar transport protein CLUAP1 in a child with a novel Joubert and oral-facial-digital overlap syndrome., Johnston JJ, Lee C, Wentzensen IM, Parisi MA, Crenshaw MM, Sapp JC, Gross JM, Wallingford JB, Biesecker LG., Cold Spring Harb Mol Case Stud. January 1, 2017; 3 (4):       

Evolutionary Proteomics Uncovers Ancient Associations of Cilia with Signaling Pathways., Sigg MA, Menchen T, Lee C, Johnson J, Jungnickel MK, Choksi SP, Garcia G, Busengdal H, Dougherty GW, Pennekamp P, Werner C, Rentzsch F, Florman HM, Krogan N, Wallingford JB, Omran H, Reiter JF., Dev Cell. January 1, 2017; 43 (6): 744-762.e11.      

Corrigendum: The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery., Toriyama M, Lee C, Taylor SP, Duran I, Cohn DH, Bruel AL, Tabler JM, Drew K, Kelly MR, Kim S, Park TJ, Braun DA, Pierquin G, Biver A, Wagner K, Malfroot A, Panigrahi I, Franco B, Al-Lami HA, Yeung Y, Choi YJ, null null, Duffourd Y, Faivre L, Rivière JB, Chen J, Liu KJ, Marcotte EM, Hildebrandt F, Thauvin-Robinet C, Krakow D, Jackson PK, Wallingford JB., Nat Genet. July 27, 2016; 48 (8): 970.

The ciliopathy-associated CPLANE proteins direct basal body recruitment of intraflagellar transport machinery., Toriyama M, Lee C, Taylor SP, Duran I, Cohn DH, Bruel AL, Tabler JM, Drew K, Kelly MR, Kim S, Park TJ, Braun DA, Pierquin G, Biver A, Wagner K, Malfroot A, Panigrahi I, Franco B, Al-Lami HA, Yeung Y, Choi YJ, null null, Duffourd Y, Faivre L, Rivière JB, Chen J, Liu KJ, Marcotte EM, Hildebrandt F, Thauvin-Robinet C, Krakow D, Jackson PK, Wallingford JB., Nat Genet. June 1, 2016; 48 (6): 648-56.                              

Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes., Phanse S, Wan C, Borgeson B, Tu F, Drew K, Clark G, Xiong X, Kagan O, Kwan J, Bezginov A, Chessman K, Pal S, Cromar G, Papoulas O, Ni Z, Boutz DR, Stoilova S, Havugimana PC, Guo X, Malty RH, Sarov M, Greenblatt J, Babu M, Derry WB, Tillier ER, Wallingford JB, Parkinson J, Marcotte EM, Emili A., Data Brief. March 1, 2016; 6 715-21.

Emergence of an Apical Epithelial Cell Surface In Vivo., Sedzinski J, Hannezo E, Tu F, Biro M, Wallingford JB., Dev Cell. January 11, 2016; 36 (1): 24-35.            

Genome evolution in the allotetraploid frog Xenopus laevis., Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS., Nature. January 1, 2016; 538 (7625): 336-343.                              

TTC25 Deficiency Results in Defects of the Outer Dynein Arm Docking Machinery and Primary Ciliary Dyskinesia with Left-Right Body Asymmetry Randomization., Wallmeier J, Shiratori H, Dougherty GW, Edelbusch C, Hjeij R, Loges NT, Menchen T, Olbrich H, Pennekamp P, Raidt J, Werner C, Minegishi K, Shinohara K, Asai Y, Takaoka K, Lee C, Griese M, Memari Y, Durbin R, Kolb-Kokocinski A, Sauer S, Wallingford JB, Hamada H, Omran H., Am J Hum Genet. January 1, 2016; 99 (2): 460-9.

Morpholinos: Antisense and Sensibility., Blum M, De Robertis EM, Wallingford JB, Niehrs C., Dev Cell. October 26, 2015; 35 (2): 145-9.

Control of vertebrate core planar cell polarity protein localization and dynamics by Prickle 2., Butler MT, Wallingford JB., Development. October 1, 2015; 142 (19): 3429-39.

Zeta-Tubulin Is a Member of a Conserved Tubulin Module and Is a Component of the Centriolar Basal Foot in Multiciliated Cells., Turk E, Wills AA, Kwon T, Sedzinski J, Wallingford JB, Stearns T., Curr Biol. August 17, 2015; 25 (16): 2177-83.              

Planar Pol(o)arity., Sedzinski J, Wallingford J., Dev Cell. June 8, 2015; 33 (5): 494-5.

The planar cell polarity effector protein Wdpcp (Fritz) controls epithelial cell cortex dynamics via septins and actomyosin., Park TJ, Kim SK, Wallingford JB., Biochem Biophys Res Commun. January 9, 2015; 456 (2): 562-6.        

In vivo investigation of cilia structure and function using Xenopus., Brooks ER, Wallingford JB., Methods Cell Biol. January 1, 2015; 127 131-59.

Hedgehog activity controls opening of the primary mouth., Tabler JM, Bolger TG, Wallingford J, Liu KJ., Dev Biol. December 1, 2014; 396 (1): 1-7.            

Identifying direct targets of transcription factor Rfx2 that coordinate ciliogenesis and cell movement., Kwon T, Chung MI, Gupta R, Baker JC, Wallingford JB, Marcotte EM., Genom Data. December 1, 2014; 2 192-194.      

Cluap1 is essential for ciliogenesis and photoreceptor maintenance in the vertebrate eye., Lee C, Wallingford JB, Gross JM., Invest Ophthalmol Vis Sci. June 26, 2014; 55 (7): 4585-92.

PCP and septins compartmentalize cortical actomyosin to direct collective cell movement., Shindo A, Wallingford JB., Science. February 7, 2014; 343 (6171): 649-52.

Proteomic profiling of cardiac tissue by isolation of nuclei tagged in specific cell types (INTACT)., Amin NM, Greco TM, Kuchenbrod LM, Rigney MM, Chung MI, Wallingford JB, Cristea IM, Conlon FL., Development. February 1, 2014; 141 (4): 962-73.            

Coordinated genomic control of ciliogenesis and cell movement by RFX2., Chung MI, Kwon T, Tu F, Brooks ER, Gupta R, Meyer M, Baker JC, Marcotte EM, Wallingford JB., Elife. January 1, 2014; 3 e01439.                                          

The Small GTPase Rsg1 is important for the cytoplasmic localization and axonemal dynamics of intraflagellar transport proteins., Brooks ER, Wallingford JB., Cilia. January 1, 2013; 2 13.                      

Vertebrate kidney tubules elongate using a planar cell polarity-dependent, rosette-based mechanism of convergent extension., Lienkamp SS, Liu K, Karner CM, Carroll TJ, Ronneberger O, Wallingford JB, Walz G., Nat Genet. December 1, 2012; 44 (12): 1382-7.      

Control of vertebrate intraflagellar transport by the planar cell polarity effector Fuz., Brooks ER, Wallingford JB., J Cell Biol. July 9, 2012; 198 (1): 37-45.          

RFX2 is broadly required for ciliogenesis during vertebrate development., Chung MI, Peyrot SM, LeBoeuf S, Park TJ, McGary KL, Marcotte EM, Wallingford JB., Dev Biol. March 1, 2012; 363 (1): 155-65.                                                          

Evolutionarily repurposed networks reveal the well-known antifungal drug thiabendazole to be a novel vascular disrupting agent., Cha HJ, Byrom M, Mead PE, Ellington AD, Wallingford JB, Marcotte EM., PLoS Biol. January 1, 2012; 10 (8): e1001379.                  

A revised model of Xenopus dorsal midline development: differential and separable requirements for Notch and Shh signaling., Peyrot SM, Wallingford JB, Harland RM., Dev Biol. April 15, 2011; 352 (2): 254-66.                              

A role for central spindle proteins in cilia structure and function., Smith KR, Kieserman EK, Wang PI, Basten SG, Giles RH, Marcotte EM, Wallingford JB., Cytoskeleton (Hoboken). February 1, 2011; 68 (2): 112-24.

Strange as it may seem: the many links between Wnt signaling, planar cell polarity, and cilia., Wallingford JB, Mitchell B., Genes Dev. February 1, 2011; 25 (3): 201-13.  

Planar cell polarity acts through septins to control collective cell movement and ciliogenesis., Kim SK, Shindo A, Park TJ, Oh EC, Ghosh S, Gray RS, Lewis RA, Johnson CA, Attie-Bittach T, Katsanis N, Wallingford JB., Science. September 10, 2010; 329 (5997): 1337-40.

High-magnification in vivo imaging of Xenopus embryos for cell and developmental biology., Kieserman EK, Lee C, Gray RS, Park TJ, Wallingford JB., Cold Spring Harb Protoc. May 1, 2010; 2010 (5): pdb.prot5427.

Preparation of fixed Xenopus embryos for confocal imaging., Wallingford JB., Cold Spring Harb Protoc. May 1, 2010; 2010 (5): pdb.prot5426.

Low-magnification live imaging of Xenopus embryos for cell and developmental biology., Wallingford JB., Cold Spring Harb Protoc. May 1, 2010; 2010 (5): pdb.prot5425.

Systematic discovery of nonobvious human disease models through orthologous phenotypes., McGary KL, Park TJ, Woods JO, Cha HJ, Wallingford JB, Marcotte EM., Proc Natl Acad Sci U S A. April 6, 2010; 107 (14): 6544-9.                                    

Direct activation of Shroom3 transcription by Pitx proteins drives epithelial morphogenesis in the developing gut., Chung MI, Nascone-Yoder NM, Grover SA, Drysdale TA, Wallingford JB., Development. April 1, 2010; 137 (8): 1339-49.              

Xenopus., Wallingford JB, Liu KJ, Zheng Y., Curr Biol. March 23, 2010; 20 (6): R263-4.  

Regulation of ciliary polarity by the APC/C., Ganner A, Lienkamp S, Schäfer T, Romaker D, Wegierski T, Park TJ, Spreitzer S, Simons M, Gloy J, Kim E, Wallingford JB, Walz G., Proc Natl Acad Sci U S A. October 20, 2009; 106 (42): 17799-804.  

The planar cell polarity effector Fuz is essential for targeted membrane trafficking, ciliogenesis and mouse embryonic development., Gray RS, Abitua PB, Wlodarczyk BJ, Szabo-Rogers HL, Blanchard O, Lee I, Weiss GS, Liu KJ, Marcotte EM, Wallingford JB, Finnell RH., Nat Cell Biol. October 1, 2009; 11 (10): 1225-32.        

Diversification of the expression patterns and developmental functions of the dishevelled gene family during chordate evolution., Gray RS, Bayly RD, Green SA, Agarwala S, Lowe CJ, Wallingford JB., Dev Dyn. August 1, 2009; 238 (8): 2044-57.            

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