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Profile Publications(76)
XB-PERS-720

Publications By Aaron M. Zorn

Results 1 - 20 of 76 results

Page(s): 1 2 3 4 Next

Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis.
Rankin SA, McCracken KW, Luedeke DM, Han L, Wells JM, Shannon JM, Zorn AM.
Dev Biol. February 1, 2018; 434 (1): 121-132.

Xenbase: a genomic, epigenomic and transcriptomic model organism database.
Karimi K, Fortriede JD, Lotay VS, Burns KA, Wang DZ, Fisher ME, Pells TJ, James-Zorn C, Wang Y, Ponferrada VG, Chu S, Chaturvedi P, Zorn AM, Vize PD.
Nucleic Acids Res. January 4, 2018; 46 (D1): D861-D868.

Navigating Xenbase: An Integrated Xenopus Genomics and Gene Expression Database.
James-Zorn C, Ponferrada V, Fisher ME, Burns K, Fortriede J, Segerdell E, Karimi K, Lotay V, Wang DZ, Chu S, Pells T, Wang Y, Vize PD, Zorn A.
Methods Mol Biol. January 1, 2018; 1757 251-305.

Xenopus genomic data and browser resources.
Vize PD, Zorn AM.
Dev Biol. January 1, 2017; 426 (2): 194-199.

Genomic integration of Wnt/β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs.
Stevens ML, Chaturvedi P, Rankin SA, Macdonald M, Jagannathan S, Yukawa M, Barski A, Zorn AM.
Development. January 1, 2017; 144 (7): 1283-1295.

High-efficiency non-mosaic CRISPR-mediated knock-in and indel mutation in F0 Xenopus.
Aslan Y, Tadjuidje E, Zorn AM, Cha SW.
Development. January 1, 2017; 144 (15): 2852-2858.

Genome evolution in the allotetraploid frog Xenopus laevis.
Session AM, Uno Y, Kwon T, Chapman JA, Toyoda A, Takahashi S, Fukui A, Hikosaka A, Suzuki A, Kondo M, van Heeringen SJ, Quigley I, Heinz S, Ogino H, Ochi H, Hellsten U, Lyons JB, Simakov O, Putnam N, Stites J, Kuroki Y, Tanaka T, Michiue T, Watanabe M, Bogdanovic O, Lister R, Georgiou G, Paranjpe SS, van Kruijsbergen I, Shu S, Carlson J, Kinoshita T, Ohta Y, Mawaribuchi S, Jenkins J, Grimwood J, Schmutz J, Mitros T, Mozaffari SV, Suzuki Y, Haramoto Y, Yamamoto TS, Takagi C, Heald R, Miller K, Haudenschild C, Kitzman J, Nakayama T, Izutsu Y, Robert J, Fortriede J, Burns K, Lotay V, Karimi K, Yasuoka Y, Dichmann DS, Flajnik MF, Houston DW, Shendure J, DuPasquier L, Vize PD, Zorn AM, Ito M, Marcotte EM, Wallingford JB, Ito Y, Asashima M, Ueno N, Matsuda Y, Veenstra GJ, Fujiyama A, Harland RM, Taira M, Rokhsar DS.
Nature. October 20, 2016; 538 (7625): 336-343.

Syndecan4 coordinates Wnt/JNK and BMP signaling to regulate foregut progenitor development.
Zhang Z, Rankin SA, Zorn AM.
Dev Biol. August 1, 2016; 416 (1): 187-199.

Identification of genes expressed in the migrating primitive myeloid lineage of Xenopus laevis.
Agricola ZN, Jagpal AK, Allbee AW, Prewitt AR, Shifley ET, Rankin SA, Zorn AM, Kenny AP.
Dev Dyn. January 1, 2016; 245 (1): 47-55.

A Retinoic Acid-Hedgehog Cascade Coordinates Mesoderm-Inducing Signals and Endoderm Competence during Lung Specification.
Rankin SA, Han L, McCracken KW, Kenny AP, Anglin CT, Grigg EA, Crawford CM, Wells JM, Shannon JM, Zorn AM.
Cell Rep. January 1, 2016; 16 (1): 66-78.

Structure of Gremlin-2 in Complex with GDF5 Gives Insight into DAN-Family-Mediated BMP Antagonism.
Nolan K, Kattamuri C, Rankin SA, Read RJ, Zorn AM, Thompson TB.
Cell Rep. January 1, 2016; 16 (8): 2077-2086.

The Xenopus ORFeome: A resource that enables functional genomics.
Grant IM, Balcha D, Hao T, Shen Y, Trivedi P, Patrushev I, Fortriede JD, Karpinka JB, Liu L, Zorn AM, Stukenberg PT, Hill DE, Gilchrist MJ.
Dev Biol. December 15, 2015; 408 (2): 345-57.

Modeling human development and disease in Xenopus. Preface.
LaBonne C, Zorn AM.
Dev Biol. December 15, 2015; 408 (2): 179.

Regeneration of Thyroid Function by Transplantation of Differentiated Pluripotent Stem Cells.
Kurmann AA, Serra M, Hawkins F, Rankin SA, Mori M, Astapova I, Ullas S, Lin S, Bilodeau M, Rossant J, Jean JC, Ikonomou L, Deterding RR, Shannon JM, Zorn AM, Hollenberg AN, Kotton DN.
Cell Stem Cell. November 5, 2015; 17 (5): 527-42.

Xenbase: Core features, data acquisition, and data processing.
James-Zorn C, Ponferrada VG, Burns KA, Fortriede JD, Lotay VS, Liu Y, Brad Karpinka J, Karimi K, Zorn AM, Vize PD.
Genesis. August 1, 2015; 53 (8): 486-97.

A Molecular atlas of Xenopus respiratory system development.
Rankin SA, Thi Tran H, Wlizla M, Mancini P, Shifley ET, Bloor SD, Han L, Vleminckx K, Wert SE, Zorn AM.
Dev Dyn. January 1, 2015; 244 (1): 69-85.

Xenbase, the Xenopus model organism database; new virtualized system, data types and genomes.
Karpinka JB, Fortriede JD, Burns KA, James-Zorn C, Ponferrada VG, Lee J, Karimi K, Zorn AM, Vize PD.
Nucleic Acids Res. January 1, 2015; 43 (Database issue): D756-63.

Finding Our Way through Phenotypes.
Deans AR, Lewis SE, Huala E, Anzaldo SS, Ashburner M, Balhoff JP, Blackburn DC, Blake JA, Burleigh JG, Chanet B, Cooper LD, Courtot M, Csösz S, Cui H, Dahdul W, Das S, Dececchi TA, Dettai A, Diogo R, Druzinsky RE, Dumontier M, Franz NM, Friedrich F, Gkoutos GV, Haendel M, Harmon LJ, Hayamizu TF, He Y, Hines HM, Ibrahim N, Jackson LM, Jaiswal P, James-Zorn C, Köhler S, Lecointre G, Lapp H, Lawrence CJ, Le Novère N, Lundberg JG, Macklin J, Mast AR, Midford PE, Mikó I, Mungall CJ, Oellrich A, Osumi-Sutherland D, Parkinson H, Ramírez MJ, Richter S, Robinson PN, Ruttenberg A, Schulz KS, Segerdell E, Seltmann KC, Sharkey MJ, Smith AD, Smith B, Specht CD, Squires RB, Thacker RW, Thessen A, Fernandez-Triana J, Vihinen M, Vize PD, Vogt L, Wall CE, Walls RL, Westerfeld M, Wharton RA, Wirkner CS, Woolley JB, Yoder MJ, Zorn AM, Mabee P.
PLoS Biol. January 1, 2015; 13 (1): e1002033.

A New Nomenclature of Xenopus laevis Chromosomes Based on the Phylogenetic Relationship to Silurana/Xenopus tropicalis.
Matsuda Y, Uno Y, Kondo M, Gilchrist MJ, Zorn AM, Rokhsar DS, Schmid M, Taira M.
Cytogenet Genome Res. January 1, 2015; 145 (3-4): 187-91.

Gene regulatory networks governing lung specification.
Rankin SA, Zorn AM.
J Cell Biochem. August 1, 2014; 115 (8): 1343-50.

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