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Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning. , Gawantka V, Pollet N , Delius H, Vingron M, Pfister R, Nitsch R, Blumenstock C, Niehrs C ., Mech Dev. October 1, 1998; 77 (2): 95-141.
Immediate upstream sequence of arrestin directs rod-specific expression in Xenopus. , Mani SS, Besharse JC , Knox BE ., J Biol Chem. May 28, 1999; 274 (22): 15590-7.
Cloning a novel developmental regulating gene, Xotx5: its potential role in anterior formation in Xenopus laevis. , Kuroda H , Hayata T, Eisaki A, Asashima M ., Dev Growth Differ. April 1, 2000; 42 (2): 87-93.
Xotx5b, a new member of the Otx gene family, may be involved in anterior and eye development in Xenopus laevis. , Vignali R , Colombetti S, Lupo G, Zhang W, Stachel S, Harland RM , Barsacchi G., Mech Dev. August 1, 2000; 96 (1): 3-13.
Structural evolution of Otx genes in craniates. , Germot A, Lecointre G, Plouhinec JL, Le Mentec C, Girardot F , Mazan S., Mol Biol Evol. September 1, 2001; 18 (9): 1668-78.
Structure and expression of an Otx5-related gene in the dogfish Scyliorhinus canicula: evidence for a conserved role of Otx5 and Crxgenes in the specification of photoreceptors. , Sauka-Spengler T , Baratte B, Shi L, Mazan S., Dev Genes Evol. December 1, 2001; 211 (11): 533-44.
Otx5 regulates genes that show circadian expression in the zebrafish pineal complex. , Gamse JT, Shen YC, Thisse C, Thisse B, Raymond PA, Halpern ME, Liang JO., Nat Genet. January 1, 2002; 30 (1): 117-21.
Overexpression of the secreted factor Mig30 expressed in the Spemann organizer impairs morphogenetic movements during Xenopus gastrulation. , Hayata T, Tanegashima K , Takahashi S , Sogame A, Asashima M ., Mech Dev. March 1, 2002; 112 (1-2): 37-51.
The rod cGMP-phosphodiesterase beta-subunit promoter is a specific target for Sp4 and is not activated by other Sp proteins or CRX. , Lerner LE, Gribanova YE, Whitaker L, Knox BE , Farber DB., J Biol Chem. July 19, 2002; 277 (29): 25877-83.
Expression patterns of an Otx2 and an Otx5 orthologue in the urodele Pleurodeles waltl: implications on the evolutionary relationships between the balancers and cement gland in amphibians. , Sauka-Spengler T , Germot A, Shi DL , Mazan S., Dev Genes Evol. September 1, 2002; 212 (8): 380-7.
Xenopus laevis red cone opsin and Prph2 promoters allow transgene expression in amphibian cones, or both rods and cones. , Moritz OL , Peck A, Tam BM., Gene. October 2, 2002; 298 (2): 173-82.
A novel function for Hedgehog signalling in retinal pigment epithelium differentiation. , Perron M , Boy S, Amato MA, Viczian A , Koebernick K, Pieler T , Harris WA ., Development. April 1, 2003; 130 (8): 1565-77.
XOtx5b and XOtx2 regulate photoreceptor and bipolar fates in the Xenopus retina. , Viczian AS , Vignali R , Zuber ME , Barsacchi G, Harris WA ., Development. April 1, 2003; 130 (7): 1281-94.
Isolation and developmental expression of Mitf in Xenopus laevis. , Kumasaka M, Sato H, Sato S, Yajima I, Yamamoto H., Dev Dyn. May 1, 2004; 230 (1): 107-13.
Conserved transcriptional activators of the Xenopus rhodopsin gene. , Whitaker SL, Knox BE ., J Biol Chem. November 19, 2004; 279 (47): 49010-8.
Systematic screening for genes specifically expressed in the anterior neuroectoderm during early Xenopus development. , Takahashi N, Tochimoto N, Ohmori SY, Mamada H, Itoh M, Inamori M, Shinga J, Osada S, Taira M ., Int J Dev Biol. January 1, 2005; 49 (8): 939-51.
Identification of novel genes affecting mesoderm formation and morphogenesis through an enhanced large scale functional screen in Xenopus. , Chen JA , Voigt J, Gilchrist M , Papalopulu N , Amaya E ., Mech Dev. March 1, 2005; 122 (3): 307-31.
The role of combinational coding by homeodomain and bHLH transcription factors in retinal cell fate specification. , Wang JC , Harris WA ., Dev Biol. September 1, 2005; 285 (1): 101-15.
Regulation of melanoblast and retinal pigment epithelium development by Xenopus laevis Mitf. , Kumasaka M, Sato S, Yajima I, Goding CR, Yamamoto H., Dev Dyn. November 1, 2005; 234 (3): 523-34.
Dystroglycan is required for proper retinal layering. , Lunardi A , Cremisi F , Dente L ., Dev Biol. February 15, 2006; 290 (2): 411-20.
Genomic analysis of Xenopus organizer function. , Hufton AL, Vinayagam A, Suhai S, Baker JC ., BMC Dev Biol. June 6, 2006; 6 27.
Timing the generation of distinct retinal cells by homeobox proteins. , Decembrini S, Andreazzoli M , Vignali R , Barsacchi G, Cremisi F ., PLoS Biol. September 1, 2006; 4 (9): e272.
The Xenopus ortholog of the nuclear hormone receptor Nr2e3 is primarily expressed in developing photoreceptors. , Martinez-De Luna RI , El-Hodiri HM ., Int J Dev Biol. January 1, 2007; 51 (3): 235-40.
Evolution of axis specification mechanisms in jawed vertebrates: insights from a chondrichthyan. , Coolen M, Sauka-Spengler T , Nicolle D, Le-Mentec C, Lallemand Y, Da Silva C, Plouhinec JL, Robert B, Wincker P, Shi DL , Mazan S., PLoS One. April 18, 2007; 2 (4): e374.
A specific box switches the cell fate determining activity of XOTX2 and XOTX5b in the Xenopus retina. , Onorati M, Cremisi F , Liu Y , He RQ , Barsacchi G, Vignali R ., Neural Dev. June 27, 2007; 2 12.
Nr2e3 and Nrl can reprogram retinal precursors to the rod fate in Xenopus retina. , McIlvain VA, Knox BE ., Dev Dyn. July 1, 2007; 236 (7): 1970-9.
Dicer inactivation causes heterochronic retinogenesis in Xenopus laevis. , Decembrini S, Andreazzoli M , Barsacchi G, Cremisi F ., Int J Dev Biol. January 1, 2008; 52 (8): 1099-103.
The role of FGF signaling in the establishment and maintenance of mesodermal gene expression in Xenopus. , Fletcher RB, Harland RM ., Dev Dyn. May 1, 2008; 237 (5): 1243-54.
Expression cloning in Xenopus identifies RNA-binding proteins as regulators of embryogenesis and Rbmx as necessary for neural and muscle development. , Dichmann DS , Fletcher RB, Harland RM ., Dev Dyn. July 1, 2008; 237 (7): 1755-66.
CRX controls retinal expression of the X-linked juvenile retinoschisis ( RS1) gene. , Langmann T, Lai CC, Weigelt K, Tam BM, Warneke-Wittstock R, Moritz OL , Weber BH., Nucleic Acids Res. November 1, 2008; 36 (20): 6523-34.
Involvement of an inner nuclear membrane protein, Nemp1, in Xenopus neural development through an interaction with the chromatin protein BAF. , Mamada H, Takahashi N, Taira M ., Dev Biol. March 15, 2009; 327 (2): 497-507.
Regulation of photoreceptor gene expression by the retinal homeobox (Rx) gene product. , Pan Y, Martinez-De Luna RI , Lou CH, Nekkalapudi S, Kelly LE, Sater AK , El-Hodiri HM ., Dev Biol. March 15, 2010; 339 (2): 494-506.
Xenopus Bsx links daily cell cycle rhythms and pineal photoreceptor fate. , D'Autilia S, Broccoli V, Barsacchi G, Andreazzoli M ., Proc Natl Acad Sci U S A. April 6, 2010; 107 (14): 6352-7.
The origin and evolution of ARGFX homeobox loci in mammalian radiation. , Li G, Holland PW ., BMC Evol Biol. June 17, 2010; 10 182.
Early onset and differential temporospatial expression of melanopsin isoforms in the developing chicken retina. , Verra DM, Contín MA, Hicks D, Guido ME., Invest Ophthalmol Vis Sci. July 29, 2011; 52 (8): 5111-20.
Dynamic in vivo binding of transcription factors to cis-regulatory modules of cer and gsc in the stepwise formation of the Spemann-Mangold organizer. , Sudou N , Yamamoto S, Ogino H , Taira M ., Development. May 1, 2012; 139 (9): 1651-61.
Cell type-specific translational profiling in the Xenopus laevis retina. , Watson FL , Mills EA, Wang X , Guo C, Chen DF, Marsh-Armstrong N ., Dev Dyn. December 1, 2012; 241 (12): 1960-72.
Identification and evolution of molecular domains involved in differentiating the cement gland-promoting activity of Otx proteins in Xenopus laevis. , Mancini P , Castelli M, Vignali R ., Mech Dev. January 1, 2013; 130 (11-12): 628-39.
Cooperative activation of Xenopus rhodopsin transcription by paired-like transcription factors. , Reks SE, McIlvain V, Zhuo X, Knox BE ., BMC Mol Biol. February 6, 2014; 15 4.
Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification. , Yasuoka Y , Suzuki Y, Takahashi S , Someya H, Sudou N , Haramoto Y , Cho KW , Asashima M , Sugano S, Taira M ., Nat Commun. July 9, 2014; 5 4322.
Characterization of the Rx1-dependent transcriptome during early retinal development. , Giudetti G, Giannaccini M, Biasci D, Mariotti S, Degl'innocenti A, Perrotta M, Barsacchi G, Andreazzoli M ., Dev Dyn. October 1, 2014; 243 (10): 1352-61.
Chronic sublethal exposure to silver nanoparticles disrupts thyroid hormone signaling during Xenopus laevis metamorphosis. , Carew AC, Hoque ME, Metcalfe CD, Peyrot C, Wilkinson KJ, Helbing CC ., Aquat Toxicol. February 1, 2015; 159 99-108.
E2a is necessary for Smad2/3-dependent transcription and the direct repression of lefty during gastrulation. , Wills AE , Baker JC ., Dev Cell. February 9, 2015; 32 (3): 345-57.
Activation of a T-box- Otx2- Gsc gene network independent of TBP and TBP-related factors. , Gazdag E, Jacobi UG, van Kruijsbergen I, Weeks DL , Veenstra GJ ., Development. April 15, 2016; 143 (8): 1340-50.
Regulation of photoreceptor gene transcription via a highly conserved transcriptional regulatory element by vsx gene products. , Pan Y, Comiskey DF, Kelly LE, Chandler DS, El-Hodiri HM ., Mol Vis. December 14, 2016; 22 1421-1428.
Spemann organizer transcriptome induction by early beta-catenin, Wnt, Nodal, and Siamois signals in Xenopus laevis. , Ding Y , Ploper D, Sosa EA, Colozza G , Moriyama Y , Benitez MD, Zhang K, Merkurjev D, De Robertis EM ., Proc Natl Acad Sci U S A. April 11, 2017; 114 (15): E3081-E3090.
A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates. , Plouhinec JL, Medina-Ruiz S, Borday C, Bernard E, Vert JP, Eisen MB, Harland RM , Monsoro-Burq AH ., PLoS Biol. October 19, 2017; 15 (10): e2004045.
Pitx1 regulates cement gland development in Xenopus laevis through activation of transcriptional targets and inhibition of BMP signaling. , Jin Y, Weinstein DC ., Dev Biol. May 1, 2018; 437 (1): 41-49.
The C-terminus of the retinal homeobox (rax) gene product modulates transcription in a context-dependent manner. , Buescher JL, El-Hodiri HM ., Mol Vis. February 23, 2019; 25 165-173.
Morpholinos Do Not Elicit an Innate Immune Response during Early Xenopus Embryogenesis. , Paraiso KD , Blitz IL , Zhou JJ , Cho KWY ., Dev Cell. May 20, 2019; 49 (4): 643-650.e3.