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Summary Expression Phenotypes Gene Literature (964) GO Terms (82) Nucleotides (271) Proteins (68) Interactants (2496) Wiki
XB-GENEPAGE-478788

Papers associated with tbxt



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referenced by:

The contribution of de novo coding mutations to meningomyelocele., Ha YJ, Nisal A, Tang I, Lee C, Jhamb I, Wallace C, Howarth R, Schroeder S, Vong KI, Meave N, Jiwani F, Barrows C, Lee S, Jiang N, Patel A, Bagga K, Banka N, Friedman L, Blanco FA, Yu S, Rhee S, Jeong HS, Plutzer I, Major MB, Benoit B, Poüs C, Heffner C, Kibar Z, Bot GM, Northrup H, Au KS, Strain M, Ashley-Koch AE, Finnell RH, Le JT, Meltzer HS, Araujo C, Machado HR, Stevenson RE, Yurrita A, Mumtaz S, Ahmed A, Khara MH, Mutchinick OM, Medina-Bereciartu JR, Hildebrandt F, Melikishvili G, Marwan AI, Capra V, Noureldeen MM, Salem AMS, Issa MY, Zaki MS, Xu L, Lee JE, Shin D, Alkelai A, Shuldiner AR, Kingsmore SF, Murray SA, Gee HY, Miller WT, Tolias KF, Wallingford JB, Spina Bifida Sequencing Consortium, Kim S, Gleeson JG., Nature. May 26, 2025; 641 (8062): 419-426.

CRISPR/Cas-mediated mRNA knockdown in the embryos of Xenopus tropicalis., Lin XL, Zhou YM, Meng K, Yang JY, Zhang H, Lin JH, Wu HY, Wang XY, Zhao H, Feng SS, Park KS, Cai DQ, Zheng L, Qi XF., Cell Biosci. April 23, 2025; 15 (1): 52.   


Reversion induced LIM domain protein (RIL) is a Daam1-interacting protein and regulator of the actin cytoskeleton during non-canonical Wnt signaling., Mezzacappa C, Komiya Y, Habas R., Dev Biol. November 1, 2024; 515 46-58.

Molecular basis of urostyle development in frogs: genes and gene regulation underlying an evolutionary novelty., Senevirathne G, Shubin NH., Open Biol. August 28, 2024; 14 (8): 240111.   


BET activity plays an essential role in control of stem cell attributes in Xenopus., Huber PB, Rao A, LaBonne C., Development. July 1, 2024; 151 (13):   


Sizzled (frzb3) physically interacts with non-canonical Wnt ligands to inhibit gastrulation cell movement., Yoon J, Kumar S, Lee H, Rehman ZU, Park S, Lee U, Kim J., Mol Cells. June 1, 2024; 47 (6): 100068.   


Xbra modulates the activity of linker region phosphorylated Smad1 during Xenopus development., Kumar S, Umair Z, Kumar V, Goutam RS, Park S, Lee U, Kim J., Sci Rep. April 18, 2024; 14 (1): 8922.   


Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae., Goutam RS, Kumar V, Lee U, Kim J., Mol Cells. April 1, 2024; 47 (4): 100058.   


Competence for neural crest induction is controlled by hydrostatic pressure through Yap., Alasaadi DN, Alvizi L, Hartmann J, Stillman N, Moghe P, Hiiragi T, Mayor R., Nat Cell Biol. March 18, 2024;   


Maternal and zygotic contributions to H3K4me1 chromatin marking during germ layer formation., Paraiso KD, Blitz IL, Cho KWY., Dev Biol. February 15, 2024; 518 8-19.

Cell lineage-guided mass spectrometry reveals increased energy metabolism and reactive oxygen species in the vertebrate organizer., Baxi AB, Li J, Quach VM, Pade LR, Moody SA, Nemes P., Proc Natl Acad Sci U S A. February 6, 2024; 121 (6): e2311625121.   


ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation., Wang C, Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y, Qi X, Cai D, Mao B, Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H., EMBO Rep. February 1, 2024; 25 (2): 646-671.   


Mechanical Tensions Regulate Gene Expression in the Xenopus laevis Axial Tissues., Eroshkin FM, Fefelova EA, Bredov DV, Orlov EE, Kolyupanova NM, Mazur AM, Sokolov AS, Zhigalova NA, Prokhortchouk EB, Nesterenko AM, Zaraisky AG., Int J Mol Sci. January 10, 2024; 25 (2):   


Mitochondrial leak metabolism induces the Spemann-Mangold Organizer via Hif-1α in Xenopus., MacColl Garfinkel A, Mnatsakanyan N, Patel JH, Wills AE, Shteyman A, Smith PJS, Alavian KN, Jonas EA, Khokha MK., Dev Cell. November 20, 2023; 58 (22): 2597-2613.e4.   


Gene expression in notochord and nuclei pulposi: a study of gene families across the chordate phylum., Raghavan R, Coppola U, Wu Y, Ihewulezi C, Negrón-Piñeiro LJ, Maguire JE, Hong J, Cunningham M, Kim HJ, Albert TJ, Ali AM, Saint-Jeannet JP, Ristoratore F, Dahia CL, Di Gregorio A., BMC Ecol Evol. October 27, 2023; 23 (1): 63.   


Purine Biosynthesis Pathways Are Required for Myogenesis in Xenopus laevis., Duperray M, Hardet F, Henriet E, Saint-Marc C, Boué-Grabot E, Daignan-Fornier B, Massé K, Pinson B., Cells. September 28, 2023; 12 (19):   


Transmembrane protein 150b attenuates BMP signaling in the Xenopus organizer., Keum BR, Yeo I, Koo Y, Han W, Choi SC, Kim GH, Han JK., J Cell Physiol. August 1, 2023; 238 (8): 1850-1866.   


The complete dorsal structure is formed from only the blastocoel roof of Xenopus blastula: insight into the gastrulation movement evolutionarily conserved among chordates., Sato Y, Narasaki I, Kunimoto T, Moriyama Y, Hashimoto C., Dev Genes Evol. June 1, 2023; 233 (1): 1-12.   


RAF1 deficiency causes a lethal syndrome that underscores RTK signaling during embryogenesis., Wong S, Tan YX, Loh AYT, Tan KY, Lee H, Aziz Z, Nelson SF, Özkan E, Kayserili H, Escande-Beillard N, Reversade B., EMBO Mol Med. May 8, 2023; 15 (5): e17078.   


OTUD3: A Lys6 and Lys63 specific deubiquitinase in early vertebrate development., Job F, Mai C, Villavicencio-Lorini P, Herfurth J, Neuhaus H, Hoffmann K, Pfirrmann T, Hollemann T., Biochim Biophys Acta Gene Regul Mech. March 1, 2023; 1866 (1): 194901.   


Production and characterization of monoclonal antibodies to Xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 15, 2023; 150 (4):   


Production and characterization of monoclonal antibodies to xenopus proteins., Horr B, Kurtz R, Pandey A, Hoffstrom BG, Schock E, LaBonne C, Alfandari D, Alfandari D., Development. February 14, 2023;   


Recognition of H2AK119ub plays an important role in RSF1-regulated early Xenopus development., Parast SM, Yu D, Chen C, Dickinson AJ, Chang C, Wang H., Front Cell Dev Biol. January 1, 2023; 11 1168643.   


Regulation of gene expression downstream of a novel Fgf/Erk pathway during Xenopus development., Cowell LM, King M, West H, Broadsmith M, Genever P, Pownall ME, Isaacs HV., PLoS One. January 1, 2023; 18 (10): e0286040.   


Reconstructing gene regulatory networks of biological function using differential equations of multilayer perceptrons., Mao G, Zeng R, Peng J, Zuo K, Pang Z, Liu J., BMC Bioinformatics. November 24, 2022; 23 (1): 503.   


Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR., Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK., Nat Commun. November 5, 2022; 13 (1): 6681.   


Engagement of Foxh1 in chromatin regulation revealed by protein interactome analyses., Zhou JJ, Pham PD, Han H, Wang W, Cho KWY., Dev Growth Differ. August 1, 2022; 64 (6): 297-305.   


Normal Table of Xenopus development: a new graphical resource., Zahn N, James-Zorn C, Ponferrada VG, Adams DS, Grzymkowski J, Buchholz DR, Nascone-Yoder NM, Horb M, Moody SA, Vize PD, Zorn AM., Development. July 15, 2022; 149 (14):   


HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs., Liang T, Bai J, Zhou W, Lin H, Ma S, Zhu X, Tao Q, Xi Q., Cell Rep. July 12, 2022; 40 (2): 111038.   


Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho JS, Yasuoka Y, Sudou N, Bright AR, Wlizla M, Veenstra GJC, Taira M, Zorn AM, Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.   


Xbp1 and Brachyury establish an evolutionarily conserved subcircuit of the notochord gene regulatory network., Wu Y, Devotta A, José-Edwards DS, Kugler JE, Negrón-Piñeiro LJ, Braslavskaya K, Addy J, Saint-Jeannet JP, Di Gregorio A., Elife. January 20, 2022; 11   


FGF-mediated establishment of left-right asymmetry requires Rab7 function in the dorsal mesoderm in Xenopus., Kreis J, Camuto CM, Elsner CC, Vogel S, Vick P., Front Cell Dev Biol. January 1, 2022; 10 981762.   


Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos., Umair Z, Kumar V, Goutam RS, Kumar S, Kumar S, Lee U, Kim J., Mol Cells. October 31, 2021; 44 (10): 723-735.   


The enpp4 ectonucleotidase regulates kidney patterning signalling networks in Xenopus embryos., Massé K, Bhamra S, Paroissin C, Maneta-Peyret L, Boué-Grabot E, Jones EA., Commun Biol. October 7, 2021; 4 (1): 1158.   


Huntingtin CAG expansion impairs germ layer patterning in synthetic human 2D gastruloids through polarity defects., Galgoczi S, Ruzo A, Markopoulos C, Yoney A, Phan-Everson T, Li S, Haremaki T, Metzger JJ, Etoc F, Brivanlou AH., Development. October 1, 2021; 148 (19):   


Tril dampens Nodal signaling through Pellino2- and Traf6-mediated activation of Nedd4l., Kim HS, Green YS, Xie Y, Christian JL., Proc Natl Acad Sci U S A. September 7, 2021; 118 (36):   


A systemic cell cycle block impacts stage-specific histone modification profiles during Xenopus embryogenesis., Pokrovsky D, Forné I, Straub T, Imhof A, Rupp RAW., PLoS Biol. September 1, 2021; 19 (9): e3001377.   


Rab7 is required for mesoderm patterning and gastrulation in Xenopus., Kreis J, Wielath FM, Vick P., Biol Open. July 15, 2021; 10 (7):   


BMP signaling is enhanced intracellularly by FHL3 controlling WNT-dependent spatiotemporal emergence of the neural crest., Alkobtawi M, Pla P, Monsoro-Burq AH., Cell Rep. June 22, 2021; 35 (12): 109289.   


The cytokine FAM3B/PANDER is an FGFR ligand that promotes posterior development in Xenopus., Zhang F, Zhu X, Wang P, He Q, Huang H, Zheng T, Li Y, Jia H, Xu L, Zhao H, Colozza G, Tao Q, De Robertis EM, Ding Y., Proc Natl Acad Sci U S A. May 18, 2021; 118 (20):   


Kindlin2 regulates neural crest specification via integrin-independent regulation of the FGF signaling pathway., Wang H, Wang C, Wang C, Wang C, Long Q, Zhang Y, Wang M, Liu J, Qi X, Cai D, Lu G, Sun J, Yao YG, Chan WY, Chan WY, Deng Y, Zhao H., Development. May 15, 2021; 148 (10):   


Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates., Bright AR, van Genesen S, Li Q, Grasso A, Frölich S, van der Sande M, van Heeringen SJ, Veenstra GJC., EMBO J. May 3, 2021; 40 (9): e104913.   


A temporally resolved transcriptome for developing "Keller" explants of the Xenopus laevis dorsal marginal zone., Kakebeen AD, Huebner RJ, Shindo A, Kwon K, Kwon T, Wills AE, Wallingford JB., Dev Dyn. May 1, 2021; 250 (5): 717-731.   


Furry is required for cell movements during gastrulation and functionally interacts with NDR1., Cervino AS, Moretti B, Stuckenholz C, Grecco HE, Davidson LA, Davidson LA, Cirio MC., Sci Rep. March 23, 2021; 11 (1): 6607.   


Segregation of brain and organizer precursors is differentially regulated by Nodal signaling at blastula stage., Castro Colabianchi AM, Tavella MB, Boyadjián López LE, Rubinstein M, Franchini LF, López SL., Biol Open. February 25, 2021; 10 (2):   


Modeling endoderm development and disease in Xenopus., Edwards NA, Zorn AM., Curr Top Dev Biol. January 1, 2021; 145 61-90.

Evolution of Somite Compartmentalization: A View From Xenopus., Della Gaspera B, Weill L, Chanoine C., Front Cell Dev Biol. January 1, 2021; 9 790847.   


Xenopus gpx3 Mediates Posterior Development by Regulating Cell Death during Embryogenesis., Lee H, Lee H, Ismail T, Kim Y, Chae S, Ryu HY, Lee DS, Kwon TK, Park TJ, Kwon T, Lee HS, Lee HS., Antioxidants (Basel). December 12, 2020; 9 (12):   


X-box-binding protein 1 is required for pancreatic development in Xenopus laevis., Yang J, Liu X, Yuan F, Liu J, Li D, Wei L, Wang X, Yuan L., Acta Biochim Biophys Sin (Shanghai). December 11, 2020; 52 (11): 1215-1226.   


Generation of a FOXH1 homozygous knockout human embryonic stem cell line by CRISPR/Cas9 system., Zhang T, Huang W, Xue X., Stem Cell Res. December 10, 2020; 50 102121.   

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