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A gene expression screen. , Wang Z, Brown DD ., Proc Natl Acad Sci U S A. December 15, 1991; 88 (24): 11505-9.
Transcriptional activation of the matrix metalloproteinase gene stromelysin-3 coincides with thyroid hormone-induced cell death during frog metamorphosis. , Patterton D, Hayes WP, Shi YB , Shi YB ., Dev Biol. January 1, 1995; 167 (1): 252-62.
Transient expression of stromelysin-3 mRNA in the amphibian small intestine during metamorphosis. , Ishizuya-Oka A , Ueda S, Shi YB , Shi YB ., Cell Tissue Res. February 1, 1996; 283 (2): 325-9.
The thyroid hormone-induced tail resorption program during Xenopus laevis metamorphosis. , Brown DD , Wang Z, Furlow JD , Kanamori A, Schwartzman RA, Remo BF, Pinder A., Proc Natl Acad Sci U S A. March 5, 1996; 93 (5): 1924-9.
Rat stromelysin 3: cDNA cloning from healing skin wound, activation by furin and expression in rat tissues. , Okada A, Saez S, Misumi Y, Basset P., Gene. February 7, 1997; 185 (2): 187-93.
A novel matrix metalloproteinase gene (XMMP) encoding vitronectin-like motifs is transiently expressed in Xenopus laevis early embryo development. , Yang M, Murray MT, Kurkinen M., J Biol Chem. May 23, 1997; 272 (21): 13527-33.
Thyroid hormone-induced apoptosis of larval cells and differentiation of pepsinogen-producing cells in the stomach of Xenopus laevis in vitro. , Ishizuya-Oka A , Inokuchi T, Ueda S., Differentiation. June 1, 1998; 63 (2): 59-68.
Unique organization and involvement of GAGA factors in transcriptional regulation of the Xenopus stromelysin-3 gene. , Li J, Liang VC, Sedgwick T, Wong J, Shi YB , Shi YB ., Nucleic Acids Res. June 15, 1998; 26 (12): 3018-25.
The expression pattern of thyroid hormone response genes in remodeling tadpole tissues defines distinct growth and resorption gene expression programs. , Berry DL, Rose CS, Remo BF, Brown DD ., Dev Biol. November 1, 1998; 203 (1): 24-35.
The expression pattern of thyroid hormone response genes in the tadpole tail identifies multiple resorption programs. , Berry DL, Schwartzman RA, Brown DD ., Dev Biol. November 1, 1998; 203 (1): 12-23.
Spatial and temporal regulation of collagenases-3, -4, and stromelysin -3 implicates distinct functions in apoptosis and tissue remodeling during frog metamorphosis. , Damjanovski S , Ishizuya-Oka A , Shi YB , Shi YB ., Cell Res. June 1, 1999; 9 (2): 91-105.
Differential regulation of three thyroid hormone-responsive matrix metalloproteinase genes implicates distinct functions during frog embryogenesis. , Damjanovski S , Puzianowska-Kuznicka M, Ishuzuya-Oka A, Shi YB , Shi YB ., FASEB J. March 1, 2000; 14 (3): 503-10.
Requirement for matrix metalloproteinase stromelysin-3 in cell migration and apoptosis during tissue remodeling in Xenopus laevis. , Ishizuya-Oka A , Li Q , Amano T , Damjanovski S , Ueda S, Shi YB ., J Cell Biol. September 4, 2000; 150 (5): 1177-88.
Multiple stage-dependent roles for histone deacetylases during amphibian embryogenesis: implications for the involvement of extracellular matrix remodeling. , Damjanovski S , Sachs LM , Shi YB , Shi YB ., Int J Dev Biol. October 1, 2000; 44 (7): 769-76.
Overexpression of matrix metalloproteinases leads to lethality in transgenic Xenopus laevis: implications for tissue-dependent functions of matrix metalloproteinases during late embryonic development. , Damjanovski S , Amano T , Li Q , Pei D, Shi YB , Shi YB ., Dev Dyn. May 1, 2001; 221 (1): 37-47.
Cryopreservation of Xenopus transgenic lines. , Buchholz DR , Fu L, Shi YB , Shi YB ., Mol Reprod Dev. January 1, 2004; 67 (1): 65-9.
Substrate specificity of Xenopus matrix metalloproteinase stromelysin-3. , Amano T , Fu L, Sahu S, Markey M, Shi YB , Shi YB ., Int J Mol Med. August 1, 2004; 14 (2): 233-9.
Matrix metalloproteinase stromelysin-3 in development and pathogenesis. , Wei L, Shi YB ., Histol Histopathol. January 1, 2005; 20 (1): 177-85.
The matrix metalloproteinase stromelysin-3 cleaves laminin receptor at two distinct sites between the transmembrane domain and laminin binding sequence within the extracellular domain. , Amano T , Kwak O, Fu L, Marshak A, Shi YB , Shi YB ., Cell Res. March 1, 2005; 15 (3): 150-9.
A Xenopus tropicalis oligonucleotide microarray works across species using RNA from Xenopus laevis. , Chalmers AD , Goldstone K, Smith JC , Gilchrist M , Amaya E , Papalopulu N ., Mech Dev. March 1, 2005; 122 (3): 355-63.
A causative role of stromelysin-3 in extracellular matrix remodeling and epithelial apoptosis during intestinal metamorphosis in Xenopus laevis. , Fu L, Ishizuya-Oka A , Buchholz DR , Amano T , Matsuda H, Shi YB , Shi YB ., J Biol Chem. July 29, 2005; 280 (30): 27856-65.
Matrix metalloproteinases are required for retinal ganglion cell axon guidance at select decision points. , Hehr CL , Hocking JC , McFarlane S ., Development. August 1, 2005; 132 (15): 3371-9.
Spatio-temporal regulation and cleavage by matrix metalloproteinase stromelysin-3 implicate a role for laminin receptor in intestinal remodeling during Xenopus laevis metamorphosis. , Amano T , Fu L, Marshak A, Kwak O, Shi YB , Shi YB ., Dev Dyn. September 1, 2005; 234 (1): 190-200.
Molecular mechanisms for thyroid hormone-induced remodeling in the amphibian digestive tract: a model for studying organ regeneration. , Ishizuya-Oka A , Shi YB , Shi YB ., Dev Growth Differ. December 1, 2005; 47 (9): 601-7.
Thyroid hormone receptor expression in the obligatory paedomorphic salamander Necturus maculosus. , Vlaeminck-Guillem V, Safi R, Guillem P, Leteurtre E, Duterque-Coquillaud M, Laudet V ., Int J Dev Biol. January 1, 2006; 50 (6): 553-60.
Cloning and developmental characterization of Xenopus laevis membrane type-3 matrix metalloproteinase ( MT3-MMP). , Hammoud L, Walsh LA, Damjanovski S ., Biochem Cell Biol. April 1, 2006; 84 (2): 167-77.
Transcriptional regulation of the Xenopus laevis Stromelysin-3 gene by thyroid hormone is mediated by a DNA element in the first intron. , Fu L, Tomita A, Wang H, Buchholz DR , Shi YB , Shi YB ., J Biol Chem. June 23, 2006; 281 (25): 16870-8.
Roles of Matrix Metalloproteinases and ECM Remodeling during Thyroid Hormone-Dependent Intestinal Metamorphosis in Xenopus laevis. , Fu L, Hasebe T , Ishizuya-Oka A , Shi YB ., Organogenesis. January 1, 2007; 3 (1): 14-9.
Regeneration of the amphibian intestinal epithelium under the control of stem cell niche. , Ishizuya-Oka A ., Dev Growth Differ. February 1, 2007; 49 (2): 99-107.
Expression of matrix metalloproteinase genes in regressing or remodeling organs during amphibian metamorphosis. , Fujimoto K , Nakajima K , Yaoita Y ., Dev Growth Differ. February 1, 2007; 49 (2): 131-43.
A role of unliganded thyroid hormone receptor in postembryonic development in Xenopus laevis. , Sato Y, Buchholz DR , Paul BD , Shi YB , Shi YB ., Mech Dev. July 1, 2007; 124 (6): 476-88.
Regulation of adult intestinal epithelial stem cell development by thyroid hormone during Xenopus laevis metamorphosis. , Ishizuya-Oka A , Shi YB ., Dev Dyn. December 1, 2007; 236 (12): 3358-68.
Regulation of extracellular matrix remodeling and cell fate determination by matrix metalloproteinase stromelysin-3 during thyroid hormone-dependent post-embryonic development. , Shi YB , Fu L, Hasebe T , Ishizuya-Oka A ., Pharmacol Ther. December 1, 2007; 116 (3): 391-400.
Genome-wide identification of Xenopus matrix metalloproteinases: conservation and unique duplications in amphibians. , Fu L, Das B, Mathew S, Shi YB ., BMC Genomics. February 17, 2009; 10 81.
Mutational analysis of the cleavage of the cancer-associated laminin receptor by stromelysin-3 reveals the contribution of flanking sequences to site recognition and cleavage efficiency. , Fiorentino M, Fu L, Shi YB ., Int J Mol Med. March 1, 2009; 23 (3): 389-97.
Molecular features of thyroid hormone-regulated skin remodeling in Xenopus laevis during metamorphosis. , Suzuki K , Machiyama F, Nishino S, Watanabe Y, Kashiwagi K , Kashiwagi A , Yoshizato K ., Dev Growth Differ. May 1, 2009; 51 (4): 411-27.
Cell-cell interactions during remodeling of the intestine at metamorphosis in Xenopus laevis. , Schreiber AM , Mukhi S , Brown DD ., Dev Biol. July 1, 2009; 331 (1): 89-98.
Differential regulation of cell type-specific apoptosis by stromelysin-3: a potential mechanism via the cleavage of the laminin receptor during tail resorption in Xenopus laevis. , Mathew S, Fu L, Fiorentino M, Matsuda H, Das B, Shi YB ., J Biol Chem. July 3, 2009; 284 (27): 18545-56.
Studies on Xenopus laevis intestine reveal biological pathways underlying vertebrate gut adaptation from embryo to adult. , Heimeier RA, Das B, Buchholz DR , Fiorentino M, Shi YB ., Genome Biol. January 1, 2010; 11 (5): R55.
Tissue-dependent induction of apoptosis by matrix metalloproteinase stromelysin-3 during amphibian metamorphosis. , Mathew S, Fu L, Hasebe T , Ishizuya-Oka A , Shi YB ., Birth Defects Res C Embryo Today. March 1, 2010; 90 (1): 55-66.
Transdifferentiation from cornea to lens in Xenopus laevis depends on BMP signalling and involves upregulation of Wnt signalling. , Day RC, Beck CW ., BMC Dev Biol. January 26, 2011; 11 54.
Amphibian organ remodeling during metamorphosis: insight into thyroid hormone-induced apoptosis. , Ishizuya-Oka A ., Dev Growth Differ. February 1, 2011; 53 (2): 202-12.
Transdifferentiation of tadpole pancreatic acinar cells to duct cells mediated by Notch and stromelysin-3. , Mukhi S , Brown DD ., Dev Biol. March 15, 2011; 351 (2): 311-7.
Characterization of Xenopus tissue inhibitor of metalloproteinases-2: a role in regulating matrix metalloproteinase activity during development. , Fu L, Sun G , Fiorentino M, Shi YB ., PLoS One. January 1, 2012; 7 (5): e36707.
Cytological and morphological analyses reveal distinct features of intestinal development during Xenopus tropicalis metamorphosis. , Sterling J, Fu L, Matsuura K, Shi YB ., PLoS One. January 1, 2012; 7 (10): e47407.
Thyroid hormone-dependent development in Xenopus laevis: a sensitive screen of thyroid hormone signaling disruption by municipal wastewater treatment plant effluent. , Searcy BT, Beckstrom-Sternberg SM, Beckstrom-Sternberg JS, Stafford P, Schwendiman AL, Soto-Pena J, Owen MC, Ramirez C, Phillips J, Veldhoen N, Helbing CC , Propper CR., Gen Comp Endocrinol. May 1, 2012; 176 (3): 481-92.
Formation of a "Pre- mouth Array" from the Extreme Anterior Domain Is Directed by Neural Crest and Wnt/PCP Signaling. , Jacox L, Chen J , Rothman A, Lathrop-Marshall H, Sive H ., Cell Rep. August 2, 2016; 16 (5): 1445-1455.
Thyroid Hormone Receptor α Controls Developmental Timing and Regulates the Rate and Coordination of Tissue-Specific Metamorphosis in Xenopus tropicalis. , Wen L, Shibata Y, Su D, Fu L, Luu N, Shi YB , Shi YB ., Endocrinology. June 1, 2017; 158 (6): 1985-1998.
Growth, Development, and Intestinal Remodeling Occurs in the Absence of Thyroid Hormone Receptor α in Tadpoles of Xenopus tropicalis. , Choi J, Ishizuya-Oka A , Buchholz DR ., Endocrinology. June 1, 2017; 158 (6): 1623-1633.
Structural basis of subunit selectivity for competitive NMDA receptor antagonists with preference for GluN2A over GluN2B subunits. , Lind GE, Mou TC, Tamborini L, Pomper MG, De Micheli C, Conti P, Pinto A, Hansen KB., Proc Natl Acad Sci U S A. August 15, 2017; 114 (33): E6942-E6951.