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ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation. , Wang C , Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y , Qi X, Cai D, Mao B , Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H ., EMBO Rep. February 1, 2024; 25 (2): 646-671.
Transmembrane protein 150b attenuates BMP signaling in the Xenopus organizer. , Keum BR, Yeo I, Koo Y, Han W, Choi SC, Kim GH , Han JK ., J Cell Physiol. August 1, 2023; 238 (8): 1850-1866.
Two Homeobox Transcription Factors, Goosecoid and Ventx1.1, Oppositely Regulate Chordin Transcription in Xenopus Gastrula Embryos. , Kumar V , Umair Z, Lee U, Kim J ., Cells. March 11, 2023; 12 (6):
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions. , Johnson K, Freedman S, Braun R, LaBonne C ., BMC Genomics. October 23, 2022; 23 (1): 723.
HMCES modulates the transcriptional regulation of nodal/activin and BMP signaling in mESCs. , Liang T, Bai J, Zhou W, Lin H, Ma S, Zhu X, Tao Q , Xi Q., Cell Rep. July 12, 2022; 40 (2): 111038.
Ventx Family and Its Functional Similarities with Nanog: Involvement in Embryonic Development and Cancer Progression. , Kumar S , Kumar S , Kumar V , Li W , Kim J ., Int J Mol Sci. March 1, 2022; 23 (5):
Uncovering the mesendoderm gene regulatory network through multi-omic data integration. , Jansen C, Paraiso KD , Zhou JJ , Blitz IL , Fish MB, Charney RM , Cho JS, Yasuoka Y , Sudou N , Bright AR, Wlizla M , Veenstra GJC , Taira M , Zorn AM , Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.
Reduced Retinoic Acid Signaling During Gastrulation Induces Developmental Microcephaly. , Gur M, Bendelac-Kapon L, Shabtai Y, Pillemer G, Fainsod A ., Front Cell Dev Biol. January 1, 2022; 10 844619.
Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos. , Umair Z, Kumar V , Goutam RS, Kumar S , Kumar S , Lee U, Kim J ., Mol Cells. October 31, 2021; 44 (10): 723-735.
Diversity and robustness of bone morphogenetic protein pattern formation. , Madamanchi A, Mullins MC, Umulis DM., Development. April 1, 2021; 148 (7):
Foxd4l1.1 negatively regulates transcription of neural repressor ventx1.1 during neuroectoderm formation in Xenopus embryos. , Kumar S , Kumar S , Umair Z, Kumar V , Kumar S , Lee U, Kim J ., Sci Rep. October 8, 2020; 10 (1): 16780.
TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis. , Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG , He X ., Elife. September 14, 2020; 9
Natural size variation among embryos leads to the corresponding scaling in gene expression. , Leibovich A, Edri T, Klein SL, Moody SA , Fainsod A ., Dev Biol. June 15, 2020; 462 (2): 165-179.
Role of dipeptidyl peptidase-4 as a potentiator of activin/nodal signaling pathway. , Park DS, Kim K, Jang M, Choi SC., BMB Rep. December 1, 2018; 51 (12): 636-641.
Transcriptomics of dorso- ventral axis determination in Xenopus tropicalis. , Monteiro RS , Gentsch GE , Smith JC ., Dev Biol. July 15, 2018; 439 (2): 69-79.
Tbx2 is required for the suppression of mesendoderm during early Xenopus development. , Teegala S , Chauhan R, Lei E, Weinstein DC ., Dev Dyn. July 1, 2018; 247 (7): 903-913.
ADMP controls the size of Spemann's organizer through a network of self-regulating expansion-restriction signals. , Leibovich A, Kot-Leibovich H, Ben-Zvi D, Fainsod A ., BMC Biol. January 22, 2018; 16 (1): 13.
A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates. , Plouhinec JL, Medina-Ruiz S, Borday C, Bernard E, Vert JP, Eisen MB, Harland RM , Monsoro-Burq AH ., PLoS Biol. October 19, 2017; 15 (10): e2004045.
Nodal/Activin Pathway is a Conserved Neural Induction Signal in Chordates. , Le Petillon Y, Luxardi G , Scerbo P , Cibois M, Leon A, Subirana L, Irimia M, Kodjabachian L , Escriva H, Bertrand S., Nat Ecol Evol. August 1, 2017; 1 (8): 1192-1200.
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition. , Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW ., PLoS Genet. May 12, 2017; 13 (5): e1006757.
Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling. , Han W, Lee H , Lee H , Han JK ., Sci Rep. February 15, 2017; 7 42590.
The MLL/Setd1b methyltransferase is required for the Spemann's organizer gene activation in Xenopus. , Lin H, Min Z, Tao Q , Tao Q ., Mech Dev. November 1, 2016; 142 1-9.
Ascl1 represses the mesendoderm induction in Xenopus. , Min Z, Lin H, Zhu X, Gao L, Khand AA, Tao Q ., Acta Biochim Biophys Sin (Shanghai). November 1, 2016; 48 (11): 1006-1015.
Activation of a T-box- Otx2- Gsc gene network independent of TBP and TBP-related factors. , Gazdag E, Jacobi UG, van Kruijsbergen I, Weeks DL , Veenstra GJ ., Development. April 15, 2016; 143 (8): 1340-50.
Differential requirement of bone morphogenetic protein receptors Ia (ALK3) and Ib (ALK6) in early embryonic patterning and neural crest development. , Schille C, Heller J, Schambony A ., BMC Dev Biol. January 19, 2016; 16 1.
Specification of anteroposterior axis by combinatorial signaling during Xenopus development. , Carron C, Shi DL ., Wiley Interdiscip Rev Dev Biol. January 1, 2016; 5 (2): 150-68.
Temporally coordinated signals progressively pattern the anteroposterior and dorsoventral body axes. , Tuazon FB, Mullins MC., Semin Cell Dev Biol. June 1, 2015; 42 118-33.
Notum is required for neural and head induction via Wnt deacylation, oxidation, and inactivation. , Zhang X, Cheong SM, Amado NG, Reis AH, MacDonald BT, Zebisch M, Jones EY, Abreu JG , He X ., Dev Cell. March 23, 2015; 32 (6): 719-30.
Insulin-like factor regulates neural induction through an IGF1 receptor-independent mechanism. , Haramoto Y , Takahashi S , Oshima T, Onuma Y , Ito Y , Asashima M ., Sci Rep. January 12, 2015; 5 11603.
Direct regulation of siamois by VegT is required for axis formation in Xenopus embryo. , Li HY, El Yakoubi W, Shi DL ., Int J Dev Biol. January 1, 2015; 59 (10-12): 443-51.
Fezf2 promotes neuronal differentiation through localised activation of Wnt/ β-catenin signalling during forebrain development. , Zhang S , Li J, Lea R, Vleminckx K , Vleminckx K , Amaya E ., Development. December 1, 2014; 141 (24): 4794-805.
Fezf2 promotes neuronal differentiation through localised activation of Wnt/ β-catenin signalling during forebrain development. , Zhang S , Li J, Lea R, Vleminckx K , Vleminckx K , Amaya E ., Development. December 1, 2014; 141 (24): 4794-805.
The splicing factor PQBP1 regulates mesodermal and neural development through FGF signaling. , Iwasaki Y , Thomsen GH ., Development. October 1, 2014; 141 (19): 3740-51.
Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification. , Yasuoka Y , Suzuki Y, Takahashi S , Someya H, Sudou N , Haramoto Y , Cho KW , Asashima M , Sugano S, Taira M ., Nat Commun. July 9, 2014; 5 4322.
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. , Zheng Z, Christley S, Chiu WT , Blitz IL , Xie X, Cho KW , Nie Q., BMC Syst Biol. January 8, 2014; 8 3.
A genome-wide survey of maternal and embryonic transcripts during Xenopus tropicalis development. , Paranjpe SS, Jacobi UG, van Heeringen SJ, Veenstra GJ ., BMC Genomics. November 6, 2013; 14 762.
A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus. , Szenker E, Lacoste N, Almouzni G ., Cell Rep. June 28, 2012; 1 (6): 730-40.
Eps15R is required for bone morphogenetic protein signalling and differentially compartmentalizes with Smad proteins. , Callery EM , Park CY, Xu X, Zhu H, Smith JC , Thomsen GH ., Open Biol. April 1, 2012; 2 (4): 120060.
Transcriptional activation by Oct4 is sufficient for the maintenance and induction of pluripotency. , Hammachi F, Morrison GM, Sharov AA, Livigni A, Narayan S, Papapetrou EP, O'Malley J, Kaji K, Ko MS, Ptashne M, Brickman JM ., Cell Rep. February 23, 2012; 1 (2): 99-109.
Maternal xNorrin, a canonical Wnt signaling agonist and TGF-β antagonist, controls early neuroectoderm specification in Xenopus. , Xu S, Cheng F, Liang J, Wu W, Zhang J., PLoS Biol. January 1, 2012; 10 (3): e1001286.
mNanog possesses dorsal mesoderm-inducing ability by modulating both BMP and Activin/ nodal signaling in Xenopus ectodermal cells. , Miyazaki A, Ishii K, Yamashita S, Nejigane S, Matsukawa S , Ito Y , Onuma Y , Asashima M , Michiue T ., PLoS One. January 1, 2012; 7 (10): e46630.
Novel functions of Noggin proteins: inhibition of Activin/ Nodal and Wnt signaling. , Bayramov AV, Eroshkin FM, Martynova NY, Ermakova GV, Solovieva EA, Zaraisky AG ., Development. December 1, 2011; 138 (24): 5345-56.
Use of fully modified 2'-O-methyl antisense oligos for loss-of-function studies in vertebrate embryos. , Schneider PN, Olthoff JT, Matthews AJ, Houston DW ., Genesis. March 1, 2011; 49 (3): 117-23.
SNW1 is a critical regulator of spatial BMP activity, neural plate border formation, and neural crest specification in vertebrate embryos. , Wu MY, Ramel MC, Howell M, Hill CS ., PLoS Biol. February 15, 2011; 9 (2): e1000593.
The function of heterodimeric AP-1 comprised of c- Jun and c- Fos in activin mediated Spemann organizer gene expression. , Lee SY, Yoon J, Lee HS , Hwang YS, Cha SW , Jeong CH, Kim JI , Park JB, Lee JY , Kim S, Park MJ, Dong Z, Kim J ., PLoS One. January 1, 2011; 6 (7): e21796.
Direct response elements of BMP within the PV.1A promoter are essential for its transcriptional regulation during early Xenopus development. , Lee HS , Lee HS , Lee SY, Lee H , Lee H , Hwang YS, Cha SW , Park S, Lee JY , Lee JY , Park JB, Kim S, Park MJ, Kim J ., PLoS One. January 1, 2011; 6 (8): e22621.
Wnt/beta-catenin signaling is involved in the induction and maintenance of primitive hematopoiesis in the vertebrate embryo. , Tran HT, Sekkali B, Van Imschoot G, Janssens S , Vleminckx K , Vleminckx K ., Proc Natl Acad Sci U S A. September 14, 2010; 107 (37): 16160-5.
Xclaudin 1 is required for the proper gastrulation in Xenopus laevis. , Chang DJ, Hwang YS, Cha SW , Chae JP, Hwang SH, Hahn JH, Bae YC, Lee HS , Lee HS , Park MJ., Biochem Biophys Res Commun. June 18, 2010; 397 (1): 75-81.