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Cdx1 and Gsc distinctly regulate the transcription of BMP4 target gene ventx3.2 by directly binding to the proximal promoter region in Xenopus gastrulae. , Goutam RS, Kumar V , Lee U, Kim J ., Mol Cells. March 23, 2024; 47 (4): 100058.
ZSWIM4 regulates embryonic patterning and BMP signaling by promoting nuclear Smad1 degradation. , Wang C , Liu Z, Zeng Y, Zhou L, Long Q, Hassan IU, Zhang Y , Qi X, Cai D, Mao B , Lu G, Sun J, Yao Y, Deng Y, Zhao Q, Feng B, Zhou Q, Chan WY, Zhao H ., EMBO Rep. February 1, 2024; 25 (2): 646-671.
Membrane potential drives the exit from pluripotency and cell fate commitment via calcium and mTOR. , Sempou E, Kostiuk V, Zhu J, Cecilia Guerra M, Tyan L, Hwang W, Camacho-Aguilar E, Caplan MJ, Zenisek D, Warmflash A, Owens NDL, Khokha MK ., Nat Commun. November 5, 2022; 13 (1): 6681.
Bmp4 Synexpression Gene, Sizzled, Transcription Is Collectively Modulated by Smad1 and Ventx1.1/Ventx2.1 in Early Xenopus Embryos. , Rehman ZU , Tayyaba F, Lee U, Kim J ., Int J Mol Sci. November 1, 2022; 23 (21):
Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions. , Johnson K, Freedman S, Braun R, LaBonne C ., BMC Genomics. October 23, 2022; 23 (1): 723.
The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development. , Rankin SA , Rankin SA , Zorn AM ., Dev Growth Differ. September 1, 2022; 64 (7): 347-361.
Ventx Family and Its Functional Similarities with Nanog: Involvement in Embryonic Development and Cancer Progression. , Kumar S , Kumar S , Kumar V , Li W , Kim J ., Int J Mol Sci. March 1, 2022; 23 (5):
Goosecoid Controls Neuroectoderm Specification via Dual Circuits of Direct Repression and Indirect Stimulation in Xenopus Embryos. , Umair Z, Kumar V , Goutam RS, Kumar S , Kumar S , Lee U, Kim J ., Mol Cells. October 31, 2021; 44 (10): 723-735.
Foxd4l1.1 Negatively Regulates Chordin Transcription in Neuroectoderm of Xenopus Gastrula. , Kumar V , Goutam RS, Umair Z, Park S, Lee U, Kim J ., Cells. October 17, 2021; 10 (10):
R-spondins are BMP receptor antagonists in Xenopus early embryonic development. , Lee H , Lee H , Seidl C, Sun R, Glinka A , Niehrs C ., Nat Commun. November 4, 2020; 11 (1): 5570.
R-spondins are BMP receptor antagonists in Xenopus early embryonic development. , Lee H , Lee H , Seidl C, Sun R, Glinka A , Niehrs C ., Nat Commun. November 4, 2020; 11 (1): 5570.
TMEM79/MATTRIN defines a pathway for Frizzled regulation and is required for Xenopus embryogenesis. , Chen M, Amado N, Tan J, Reis A, Ge M, Abreu JG , He X ., Elife. September 14, 2020; 9
Natural size variation among embryos leads to the corresponding scaling in gene expression. , Leibovich A, Edri T, Klein SL, Moody SA , Fainsod A ., Dev Biol. June 15, 2020; 462 (2): 165-179.
Fam46a regulates BMP-dependent pre-placodal ectoderm differentiation in Xenopus. , Watanabe T, Yamamoto T , Tsukano K, Hirano S, Horikawa A, Michiue T ., Development. October 26, 2018; 145 (20):
Notch1 is asymmetrically distributed from the beginning of embryogenesis and controls the ventral center. , Castro Colabianchi AM, Revinski DR, Encinas PI, Baez MV, Monti RJ, Rodríguez Abinal M, Kodjabachian L , Franchini LF, López SL ., Development. July 17, 2018; 145 (14):
Notch1 is asymmetrically distributed from the beginning of embryogenesis and controls the ventral center. , Castro Colabianchi AM, Revinski DR, Encinas PI, Baez MV, Monti RJ, Rodríguez Abinal M, Kodjabachian L , Franchini LF, López SL ., Development. July 17, 2018; 145 (14):
Tbx2 is required for the suppression of mesendoderm during early Xenopus development. , Teegala S , Chauhan R, Lei E, Weinstein DC ., Dev Dyn. July 1, 2018; 247 (7): 903-913.
PAWS1 controls Wnt signalling through association with casein kinase 1α. , Bozatzi P, Dingwell KS, Wu KZ, Cooper F, Cummins TD, Hutchinson LD, Vogt J, Wood NT, Macartney TJ, Varghese J, Gourlay R, Campbell DG, Smith JC , Sapkota GP., EMBO Rep. April 1, 2018; 19 (4):
Timing is everything: Reiterative Wnt, BMP and RA signaling regulate developmental competence during endoderm organogenesis. , Rankin SA , Rankin SA , McCracken KW, Luedeke DM, Han L , Wells JM , Shannon JM, Zorn AM ., Dev Biol. February 1, 2018; 434 (1): 121-132.
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2. , Scerbo P , Marchal L, Kodjabachian L ., Elife. June 27, 2017; 6
A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs. , Charney RM , Paraiso KD , Blitz IL , Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.
Brg1 chromatin remodeling ATPase balances germ layer patterning by amplifying the transcriptional burst at midblastula transition. , Wagner G, Singhal N, Nicetto D, Straub T, Kremmer E, Rupp RAW ., PLoS Genet. May 12, 2017; 13 (5): e1006757.
Genomic integration of Wnt/ β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs. , Stevens ML , Chaturvedi P , Rankin SA , Rankin SA , Macdonald M, Jagannathan S, Yukawa M, Barski A, Zorn AM ., Development. April 1, 2017; 144 (7): 1283-1295.
Genomic integration of Wnt/ β-catenin and BMP/Smad1 signaling coordinates foregut and hindgut transcriptional programs. , Stevens ML , Chaturvedi P , Rankin SA , Rankin SA , Macdonald M, Jagannathan S, Yukawa M, Barski A, Zorn AM ., Development. April 1, 2017; 144 (7): 1283-1295.
Ubiquitin C-terminal hydrolase37 regulates Tcf7 DNA binding for the activation of Wnt signalling. , Han W, Lee H , Lee H , Han JK ., Sci Rep. February 15, 2017; 7 42590.
FoxD1 protein interacts with Wnt and BMP signaling to differentially pattern mesoderm and neural tissue. , Polevoy H, Malyarova A, Fonar Y, Elias S, Frank D ., Int J Dev Biol. January 1, 2017; 61 (3-4-5): 293-302.
The MLL/Setd1b methyltransferase is required for the Spemann's organizer gene activation in Xenopus. , Lin H, Min Z, Tao Q , Tao Q ., Mech Dev. November 1, 2016; 142 1-9.
Kdm2a/b Lysine Demethylases Regulate Canonical Wnt Signaling by Modulating the Stability of Nuclear β-Catenin. , Lu L, Gao Y, Zhang Z , Cao Q, Zhang X, Zou J, Cao Y ., Dev Cell. June 22, 2015; 33 (6): 660-74.
Kdm2a/b Lysine Demethylases Regulate Canonical Wnt Signaling by Modulating the Stability of Nuclear β-Catenin. , Lu L, Gao Y, Zhang Z , Cao Q, Zhang X, Zou J, Cao Y ., Dev Cell. June 22, 2015; 33 (6): 660-74.
Notum is required for neural and head induction via Wnt deacylation, oxidation, and inactivation. , Zhang X, Cheong SM, Amado NG, Reis AH, MacDonald BT, Zebisch M, Jones EY, Abreu JG , He X ., Dev Cell. March 23, 2015; 32 (6): 719-30.
Sox5 Is a DNA-binding cofactor for BMP R-Smads that directs target specificity during patterning of the early ectoderm. , Nordin K, LaBonne C ., Dev Cell. November 10, 2014; 31 (3): 374-382.
Gtpbp2 is required for BMP signaling and mesoderm patterning in Xenopus embryos. , Kirmizitas A, Gillis WQ, Zhu H, Thomsen GH ., Dev Biol. August 15, 2014; 392 (2): 358-67.
Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification. , Yasuoka Y , Suzuki Y, Takahashi S , Someya H, Sudou N , Haramoto Y , Cho KW , Asashima M , Sugano S, Taira M ., Nat Commun. July 9, 2014; 5 4322.
Inference of the Xenopus tropicalis embryonic regulatory network and spatial gene expression patterns. , Zheng Z, Christley S, Chiu WT , Blitz IL , Xie X, Cho KW , Nie Q., BMC Syst Biol. January 8, 2014; 8 3.
Zygotic expression of Exostosin1 ( Ext1) is required for BMP signaling and establishment of dorsal- ventral pattern in Xenopus. , Shieh YE, Wells DE, Sater AK ., Int J Dev Biol. January 1, 2014; 58 (1): 27-34.
Regulation of primitive hematopoiesis by class I histone deacetylases. , Shah RR, Koniski A, Shinde M, Blythe SA , Fass DM, Haggarty SJ, Palis J, Klein PS ., Dev Dyn. February 1, 2013; 242 (2): 108-21.
A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus. , Szenker E, Lacoste N, Almouzni G ., Cell Rep. June 28, 2012; 1 (6): 730-40.
TAK1 promotes BMP4/ Smad1 signaling via inhibition of erk MAPK: a new link in the FGF/BMP regulatory network. , Liu C, Goswami M, Talley J, Chesser-Martinez PL, Lou CH, Sater AK ., Differentiation. April 1, 2012; 83 (4): 210-9.
KDEL tagging: a method for generating dominant-negative inhibitors of the secretion of TGF-beta superfamily proteins. , Matsukawa S , Moriyama Y , Hayata T, Sasaki H, Ito Y , Asashima M , Kuroda H ., Int J Dev Biol. January 1, 2012; 56 (5): 351-6.
mNanog possesses dorsal mesoderm-inducing ability by modulating both BMP and Activin/ nodal signaling in Xenopus ectodermal cells. , Miyazaki A, Ishii K, Yamashita S, Nejigane S, Matsukawa S , Ito Y , Onuma Y , Asashima M , Michiue T ., PLoS One. January 1, 2012; 7 (10): e46630.
Combinatorial roles for BMPs and Endothelin 1 in patterning the dorsal- ventral axis of the craniofacial skeleton. , Alexander C, Zuniga E, Blitz IL , Wada N, Le Pabic P, Javidan Y, Zhang T, Cho KW , Crump JG, Schilling TF., Development. December 1, 2011; 138 (23): 5135-46.
Negative feedback in the bone morphogenetic protein 4 ( BMP4) synexpression group governs its dynamic signaling range and canalizes development. , Paulsen M, Legewie S, Eils R, Karaulanov E, Niehrs C ., Proc Natl Acad Sci U S A. June 21, 2011; 108 (25): 10202-7.
Negative feedback in the bone morphogenetic protein 4 ( BMP4) synexpression group governs its dynamic signaling range and canalizes development. , Paulsen M, Legewie S, Eils R, Karaulanov E, Niehrs C ., Proc Natl Acad Sci U S A. June 21, 2011; 108 (25): 10202-7.
The response of early neural genes to FGF signaling or inhibition of BMP indicate the absence of a conserved neural induction module. , Rogers CD, Ferzli GS, Casey ES ., BMC Dev Biol. January 26, 2011; 11 74.
Direct response elements of BMP within the PV.1A promoter are essential for its transcriptional regulation during early Xenopus development. , Lee HS , Lee HS , Lee SY, Lee H , Lee H , Hwang YS, Cha SW , Park S, Lee JY , Lee JY , Park JB , Kim S, Park MJ, Kim J ., PLoS One. January 1, 2011; 6 (8): e22621.
Opposing Nodal/ Vg1 and BMP signals mediate axial patterning in embryos of the basal chordate amphioxus. , Onai T, Yu JK, Blitz IL , Cho KW , Holland LZ ., Dev Biol. August 1, 2010; 344 (1): 377-89.
Embryonic lethality of fortilin-null mutant mice by BMP-pathway overactivation. , Koide Y, Kiyota T, Tonganunt M, Pinkaew D, Liu Z, Kato Y , Hutadilok-Towatana N, Phongdara A, Fujise K., Biochim Biophys Acta. May 1, 2009; 1790 (5): 326-38.
Xenopus Sox3 activates sox2 and geminin and indirectly represses Xvent2 expression to induce neural progenitor formation at the expense of non-neural ectodermal derivatives. , Rogers CD, Harafuji N, Archer T, Cunningham DD , Casey ES ., Mech Dev. January 1, 2009; 126 (1-2): 42-55.
Xenopus Sox3 activates sox2 and geminin and indirectly represses Xvent2 expression to induce neural progenitor formation at the expense of non-neural ectodermal derivatives. , Rogers CD, Harafuji N, Archer T, Cunningham DD , Casey ES ., Mech Dev. January 1, 2009; 126 (1-2): 42-55.
Bmp signaling is necessary and sufficient for ventrolateral endoderm specification in Xenopus. , Wills A , Dickinson K, Khokha M , Baker JC ., Dev Dyn. August 1, 2008; 237 (8): 2177-86.
Regulation of TGF-(beta) signalling by N-acetylgalactosaminyltransferase-like 1. , Herr P, Korniychuk G, Yamamoto Y, Grubisic K, Oelgeschläger M ., Development. May 1, 2008; 135 (10): 1813-22.
The Gata5 target, TGIF2, defines the pancreatic region by modulating BMP signals within the endoderm. , Spagnoli FM , Brivanlou AH ., Development. February 1, 2008; 135 (3): 451-61.
Interpretation of BMP signaling in early Xenopus development. , Simeoni I, Gurdon JB ., Dev Biol. August 1, 2007; 308 (1): 82-92.
The opposing homeobox genes Goosecoid and Vent1/2 self-regulate Xenopus patterning. , Sander V, Reversade B , De Robertis EM ., EMBO J. June 20, 2007; 26 (12): 2955-65.
Xom interacts with and stimulates transcriptional activity of LEF1/TCFs: implications for ventral cell fate determination during vertebrate embryogenesis. , Gao H, Wu B, Giese R, Zhu Z., Cell Res. April 1, 2007; 17 (4): 345-56.
Dullard promotes degradation and dephosphorylation of BMP receptors and is required for neural induction. , Satow R, Kurisaki A, Chan TC , Hamazaki TS, Asashima M ., Dev Cell. December 1, 2006; 11 (6): 763-74.