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Summary Expression Phenotypes Gene Literature (135) GO Terms (6) Nucleotides (146) Proteins (59) Interactants (494) Wiki
XB--495447

Papers associated with clock



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referenced by:

An archetype and scaling of developmental tissue dynamics across species., Morishita Y, Lee SW, Suzuki T, Yokoyama H, Kamei Y, Tamura K, Kawasumi-Kita A., Nat Commun. December 11, 2023; 14 (1): 8199.                              

Age-associated DNA methylation changes in Xenopus frogs., Morselli M, Bennett R, Shaidani NI, Horb M, Peshkin L, Pellegrini M., Epigenetics. December 1, 2023; 18 (1): 2201517.                    

Molecular functions of the double-sided and inverted ubiquitin-interacting motif found in Xenopus tropicalis cryptochrome 6., Okano K, Otsuka H, Nakagawa M, Okano T., Dev Growth Differ. May 1, 2023;               

Information Theory as an Experimental Tool for Integrating Disparate Biophysical Signaling Modules., McMillen P, Walker SI, Levin M., Int J Mol Sci. August 24, 2022; 23 (17):                     

Evolution of casein kinase 1 and functional analysis of new doubletime mutants in Drosophila., Thakkar N, Giesecke A, Bazalova O, Martinek J, Smykal V, Stanewsky R, Dolezel D., Front Physiol. January 1, 2022; 13 1062632.                

Left-handed cardiac looping by cell chirality is mediated by position-specific convergent extensions., Honda H., Biophys J. December 7, 2021; 120 (23): 5371-5383.

The dual-specificity protein kinase Clk3 is essential for Xenopus neural development., Virgirinia RP, Nakamura M, Takebayashi-Suzuki K, Fatchiyah F, Suzuki A., Biochem Biophys Res Commun. August 27, 2021; 567 99-105.                                  

Comprehensive Imaging of Sensory-Evoked Activity of Entire Neurons Within the Awake Developing Brain Using Ultrafast AOD-Based Random-Access Two-Photon Microscopy., Sakaki KDR, Podgorski K, Dellazizzo Toth TA, Coleman P, Haas K., Front Neural Circuits. June 16, 2020; 14 33.                          

Seasonal temperature, the lunar cycle and diurnal rhythms interact in a combinatorial manner to modulate genomic responses to the environment in a reef-building coral., Wuitchik DM, Wang D, Pells TJ, Karimi K, Ward S, Vize PD., Mol Ecol. August 1, 2019; 28 (16): 3629-3641.            

What are the roles of retinoids, other morphogens, and Hox genes in setting up the vertebrate body axis?, Durston AJ., Genesis. July 1, 2019; 57 (7-8): e23296.            

Direct and indirect inhibition of the circadian clock protein Per1: effects on ENaC and blood pressure., Alli A, Yu L, Holzworth M, Richards J, Cheng KY, Lynch IJ, Wingo CS, Gumz ML., Am J Physiol Renal Physiol. May 1, 2019; 316 (5): F807-F813.

Dynamics of the Eukaryotic Replicative Helicase at Lagging-Strand Protein Barriers Support the Steric Exclusion Model., Kose HB, Larsen NB, Duxin JP, Yardimci H., Cell Rep. February 19, 2019; 26 (8): 2113-2125.e6.                

Cdc42 Effector Protein 3 Interacts With Cdc42 in Regulating Xenopus Somite Segmentation., Kho M, Shi H, Nie S., Front Physiol. January 1, 2019; 10 542.          

Reconstitution of Cell-cycle Oscillations in Microemulsions of Cell-free Xenopus Egg Extracts., Guan Y, Wang S, Jin M, Xu H, Yang Q., J Vis Exp. September 27, 2018; (139):


A robust and tunable mitotic oscillator in artificial cells., Guan Y, Li Z, Wang S, Barnes PM, Liu X, Xu H, Jin M, Liu AP, Yang Q., Elife. April 5, 2018; 7                       

Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis., Watanabe M, Yasuoka Y, Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H, Ogino H, Fukui A, Taira M, Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.                          

Transcriptome dynamics over a lunar month in a broadcast spawning Acroporid coral., Oldach MJ, Workentine M, Matz MV, Fan TY, Vize PD., Mol Ecol. May 1, 2017;


Collinear Hox-Hox interactions are involved in patterning the vertebrate anteroposterior (A-P) axis., Zhu K, Spaink HP, Durston AJ., PLoS One. April 11, 2017; 12 (4): e0175287.                

Direct reprogramming of fibroblasts into renal tubular epithelial cells by defined transcription factors., Kaminski MM, Tosic J, Kresbach C, Engel H, Klockenbusch J, Müller AL, Pichler R, Grahammer F, Kretz O, Huber TB, Walz G, Arnold SJ, Lienkamp SS., Nat Cell Biol. December 1, 2016; 18 (12): 1269-1280.                  

Lunar Phase Modulates Circadian Gene Expression Cycles in the Broadcast Spawning Coral Acropora millepora., Brady AK, Willis BL, Harder LD, Vize PD., Biol Bull. April 1, 2016; 230 (2): 130-42.

GIRK Channels Mediate the Nonphotic Effects of Exogenous Melatonin., Hablitz LM, Molzof HE, Abrahamsson KE, Cooper JM, Prosser RA, Gamble KL., J Neurosci. November 11, 2015; 35 (45): 14957-65.

Chronic sublethal exposure to silver nanoparticles disrupts thyroid hormone signaling during Xenopus laevis metamorphosis., Carew AC, Hoque ME, Metcalfe CD, Peyrot C, Wilkinson KJ, Helbing CC., Aquat Toxicol. February 1, 2015; 159 99-108.

Ca-α1T, a fly T-type Ca2+ channel, negatively modulates sleep., Jeong K, Lee S, Seo H, Oh Y, Jang D, Choe J, Kim D, Lee JH, Jones WD., Sci Rep. January 12, 2015; 5 17893.            

Melanopsins: Localization and Phototransduction in Xenopus laevis Melanophores., Moraes MN, Ramos BC, Poletini MO, Castrucci AM., Photochem Photobiol. January 1, 2015; 91 (5): 1133-41.

Motion based X-ray imaging modality., Szigeti K, Máthé D, Osváth S., IEEE Trans Med Imaging. October 1, 2014; 33 (10): 2031-8.

Endothelin modulates the circadian expression of non-visual opsins., Moraes MN, Lima LH, Ramos BC, Poletini Mde O, Castrucci AM., Gen Comp Endocrinol. September 1, 2014; 205 279-86.          

Identification and characterization of cryptochrome4 in the ovary of western clawed frog Xenopus tropicalis., Takeuchi T, Kubo Y, Okano K, Okano T., Zoolog Sci. March 1, 2014; 31 (3): 152-9.

Changes in oscillatory dynamics in the cell cycle of early Xenopus laevis embryos., Tsai TY, Theriot JA, Ferrell JE., PLoS Biol. February 1, 2014; 12 (2): e1001788.              

Effect of light on expression of clock genes in Xenopus laevis melanophores., Magalhães Moraes MN, de Oliveira Poletini M, Ribeiro Ramos BC, de Lima LH, de Lauro Castrucci AM., Photochem Photobiol. January 1, 2014; 90 (3): 696-701.

Early appearance of nonvisual and circadian markers in the developing inner retinal cells of chicken., Díaz NM, Morera LP, Verra DM, Contin MA, Guido ME., Biomed Res Int. January 1, 2014; 2014 646847.        

Circadian genes, xBmal1 and xNocturnin, modulate the timing and differentiation of somites in Xenopus laevis., Curran KL, Allen L, Porter BB, Dodge J, Lope C, Willadsen G, Fisher R, Johnson N, Campbell E, VonBergen B, Winfrey D, Hadley M, Kerndt T., PLoS One. January 1, 2014; 9 (9): e108266.                            

Regulation of melanopsins and Per1 by α -MSH and melatonin in photosensitive Xenopus laevis melanophores., Moraes MN, dos Santos LR, Mezzalira N, Poletini MO, Castrucci AM., Biomed Res Int. January 1, 2014; 2014 654710.      

Effect of Light on Expression of Clock Genes in Xenopus laevis Melanophores., de Carvalho Magalhães Moraes MN, de Oliveira Poletini M, Ramos BC, de Lima LH, de Lauro Castrucci AM., Photochem Photobiol. December 26, 2013;


Anteroposterior and dorsoventral patterning are coordinated by an identical patterning clock., Hashiguchi M, Mullins MC., Development. May 1, 2013; 140 (9): 1970-80.

The Cdk1-APC/C cell cycle oscillator circuit functions as a time-delayed, ultrasensitive switch., Yang Q, Ferrell JE., Nat Cell Biol. May 1, 2013; 15 (5): 519-25.

The Xenopus homeobox gene pitx3 impinges upon somitogenesis and laterality., Smoczer C, Hooker L, Brode S, Wolanski M, KhosrowShahian F, Crawford M., Biochem Cell Biol. April 1, 2013; 91 (2): 79-87.

Aquaporin AqpZ is involved in cell volume regulation and sensitivity to osmotic stress in Synechocystis sp. strain PCC 6803., Akai M, Onai K, Morishita M, Mino H, Shijuku T, Maruyama H, Arai F, Itoh S, Hazama A, Checchetto V, Szabò I, Yukutake Y, Suematsu M, Yasui M, Ishiura M, Uozumi N., J Bacteriol. December 1, 2012; 194 (24): 6828-36.

The expression of melanopsin and clock genes in Xenopus laevis melanophores and their modulation by melatonin., Bluhm AP, Obeid NN, Castrucci AM, Visconti MA., Braz J Med Biol Res. August 1, 2012; 45 (8): 730-6.        

Time space translation: a hox mechanism for vertebrate a-p patterning., Durston A, Wacker S, Bardine N, Jansen H., Curr Genomics. June 1, 2012; 13 (4): 300-7.          

Somitogenesis in the anole lizard and alligator reveals evolutionary convergence and divergence in the amniote segmentation clock., Eckalbar WL, Lasku E, Infante CR, Elsey RM, Markov GJ, Allen AN, Corneveaux JJ, Losos JB, DeNardo DF, Huentelman MJ, Wilson-Rawls J, Rawls A, Kusumi K., Dev Biol. March 1, 2012; 363 (1): 308-19.

Pronephric tubulogenesis requires Daam1-mediated planar cell polarity signaling., Miller RK, Canny SG, Jang CW, Cho K, Ji H, Wagner DS, Jones EA, Habas R, McCrea PD., J Am Soc Nephrol. September 1, 2011; 22 (9): 1654-64.

Unfertilized Xenopus eggs die by Bad-dependent apoptosis under the control of Cdk1 and JNK., Du Pasquier D, Dupré A, Jessus C., PLoS One. January 1, 2011; 6 (8): e23672.              

Circadian Cycles of Gene Expression in the Coral, Acropora millepora., Brady AK, Snyder KA, Vize PD., PLoS One. January 1, 2011; 6 (9): e25072.      

Hox collinearity - a new perspective., Durston AJ, Jansen HJ, In der Rieden P, Hooiveld MH., Int J Dev Biol. January 1, 2011; 55 (10-12): 899-908.  

Differential contribution of rod and cone circadian clocks in driving retinal melatonin rhythms in Xenopus., Hayasaka N, LaRue SI, Green CB., PLoS One. December 17, 2010; 5 (12): e15599.          

Retinal patterning by Pax6-dependent cell adhesion molecules., Rungger-Brändle E, Ripperger JA, Steiner K, Conti A, Stieger A, Soltanieh S, Rungger D., Dev Neurobiol. September 15, 2010; 70 (11): 764-80.                

Xenopus Bsx links daily cell cycle rhythms and pineal photoreceptor fate., D'Autilia S, Broccoli V, Barsacchi G, Andreazzoli M., Proc Natl Acad Sci U S A. April 6, 2010; 107 (14): 6352-7.          

Cryptochrome genes are highly expressed in the ovary of the African clawed frog, Xenopus tropicalis., Kubo Y, Takeuchi T, Okano K, Okano T., PLoS One. February 2, 2010; 5 (2): e9273.        

Identical skin toxins by convergent molecular adaptation in frogs., Roelants K, Fry BG, Norman JA, Clynen E, Schoofs L, Bossuyt F., Curr Biol. January 26, 2010; 20 (2): 125-30.    

Simple, realistic models of complex biological processes: positive feedback and bistability in a cell fate switch and a cell cycle oscillator., Ferrell JE, Pomerening JR, Kim SY, Trunnell NB, Xiong W, Huang CY, Machleder EM., FEBS Lett. December 17, 2009; 583 (24): 3999-4005.

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