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Summary Expression Phenotypes Gene Literature (37) GO Terms (4) Nucleotides (172) Proteins (51) Interactants (954) Wiki
XB--939803

Papers associated with otx1



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Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions., Johnson K, Freedman S, Braun R, LaBonne C., BMC Genomics. October 23, 2022; 23 (1): 723.                                  

Uncovering the mesendoderm gene regulatory network through multi-omic data integration., Jansen C, Paraiso KD, Zhou JJ, Blitz IL, Fish MB, Charney RM, Cho JS, Yasuoka Y, Sudou N, Bright AR, Wlizla M, Veenstra GJC, Taira M, Zorn AM, Mortazavi A, Cho KWY., Cell Rep. February 15, 2022; 38 (7): 110364.                            

Temporal and spatial transcriptomic dynamics across brain development in Xenopus laevis tadpoles., Ta AC, Huang LC, McKeown CR, Bestman JE, Van Keuren-Jensen K, Cline HT., G3 (Bethesda). January 4, 2022; 12 (1):               

A temporally resolved transcriptome for developing "Keller" explants of the Xenopus laevis dorsal marginal zone., Kakebeen AD, Huebner RJ, Shindo A, Kwon K, Kwon T, Wills AE, Wallingford JB., Dev Dyn. May 1, 2021; 250 (5): 717-731.              

Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network., Mukherjee S, Chaturvedi P, Rankin SA, Rankin SA, Fish MB, Wlizla M, Paraiso KD, MacDonald M, Chen X, Weirauch MT, Blitz IL, Cho KW, Zorn AM., Elife. September 7, 2020; 9                           

Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Paraiso KD, Blitz IL, Coley M, Cheung J, Sudou N, Taira M, Cho KWY., Cell Rep. June 4, 2019; 27 (10): 2962-2977.e5.                          

Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan., Sindelka R, Abaffy P, Qu Y, Tomankova S, Sidova M, Naraine R, Kolar M, Peuchen E, Sun L, Dovichi N, Kubista M., Sci Rep. May 29, 2018; 8 (1): 8315.                

Comparison of oocyte mRNA localization patterns in sterlet Acipenser ruthenus and African clawed frog Xenopus laevis., Pocherniaieva K, Sidova M, Havelka M, Saito T, Psenicka M, Sindelka R, Kaspar V., J Exp Zool B Mol Dev Evol. May 1, 2018; 330 (3): 181-187.

A molecular atlas of the developing ectoderm defines neural, neural crest, placode, and nonneural progenitor identity in vertebrates., Plouhinec JL, Medina-Ruiz S, Borday C, Bernard E, Vert JP, Eisen MB, Harland RM, Monsoro-Burq AH., PLoS Biol. October 19, 2017; 15 (10): e2004045.                                              

Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis., Watanabe M, Yasuoka Y, Mawaribuchi S, Kuretani A, Ito M, Kondo M, Ochi H, Ogino H, Fukui A, Taira M, Kinoshita T., Dev Biol. June 15, 2017; 426 (2): 301-324.                          

A gene regulatory program controlling early Xenopus mesendoderm formation: Network conservation and motifs., Charney RM, Paraiso KD, Blitz IL, Cho KWY., Semin Cell Dev Biol. June 1, 2017; 66 12-24.    

High-throughput analysis reveals novel maternal germline RNAs crucial for primordial germ cell preservation and proper migration., Owens DA, Butler AM, Aguero TH, Newman KM, Van Booven D, King ML., Development. January 15, 2017; 144 (2): 292-304.                                                                                        

Direct reprogramming of fibroblasts into renal tubular epithelial cells by defined transcription factors., Kaminski MM, Tosic J, Kresbach C, Engel H, Klockenbusch J, Müller AL, Pichler R, Grahammer F, Kretz O, Huber TB, Walz G, Arnold SJ, Lienkamp SS., Nat Cell Biol. December 1, 2016; 18 (12): 1269-1280.                  

An Evolutionarily Conserved Network Mediates Development of the zona limitans intrathalamica, a Sonic Hedgehog-Secreting Caudal Forebrain Signaling Center., Sena E, Feistel K, Durand BC., J Dev Biol. October 20, 2016; 4 (4):       

Microarray identification of novel genes downstream of Six1, a critical factor in cranial placode, somite, and kidney development., Yan B, Neilson KM, Ranganathan R, Maynard T, Streit A, Moody SA., Dev Dyn. February 1, 2015; 244 (2): 181-210.                          

Identification and evolution of molecular domains involved in differentiating the cement gland-promoting activity of Otx proteins in Xenopus laevis., Mancini P, Castelli M, Vignali R., Mech Dev. January 1, 2013; 130 (11-12): 628-39.          

Single blastomere expression profiling of Xenopus laevis embryos of 8 to 32-cells reveals developmental asymmetry., Flachsova M, Sindelka R, Kubista M., Sci Rep. January 1, 2013; 3 2278.      

Organization of the gymnotiform fish pallium in relation to learning and memory: IV. Expression of conserved transcription factors and implications for the evolution of dorsal telencephalon., Harvey-Girard E, Giassi AC, Ellis W, Maler L., J Comp Neurol. October 15, 2012; 520 (15): 3395-413.

The biochemical anatomy of cortical inhibitory synapses., Heller EA, Zhang W, Selimi F, Earnheart JC, Ślimak MA, Santos-Torres J, Ibañez-Tallon I, Aoki C, Chait BT, Heintz N., PLoS One. January 1, 2012; 7 (6): e39572.            

The origin and evolution of ARGFX homeobox loci in mammalian radiation., Li G, Holland PW., BMC Evol Biol. June 17, 2010; 10 182.              

Identification of germ plasm-associated transcripts by microarray analysis of Xenopus vegetal cortex RNA., Cuykendall TN, Houston DW., Dev Dyn. June 1, 2010; 239 (6): 1838-48.                              

xArx2: an aristaless homolog that regulates brain regionalization during development in Xenopus laevis., Wolanski M, Khosrowshahian F, Kelly LE, El-Hodiri HM, Crawford MJ., Genesis. January 1, 2009; 47 (1): 19-31.              

Intracellular expression profiles measured by real-time PCR tomography in the Xenopus laevis oocyte., Sindelka R, Jonák J, Hands R, Bustin SA, Kubista M., Nucleic Acids Res. February 1, 2008; 36 (2): 387-92.        

Evolution of axis specification mechanisms in jawed vertebrates: insights from a chondrichthyan., Coolen M, Sauka-Spengler T, Nicolle D, Le-Mentec C, Lallemand Y, Da Silva C, Plouhinec JL, Robert B, Wincker P, Shi DL, Mazan S., PLoS One. April 18, 2007; 2 (4): e374.              

Identification of asymmetrically localized transcripts along the animal-vegetal axis of the Xenopus egg., Kataoka K, Tazaki A, Kitayama A, Ueno N, Watanabe K, Mochii M., Dev Growth Differ. October 1, 2005; 47 (8): 511-21.        

Xenopus aristaless-related homeobox (xARX) gene product functions as both a transcriptional activator and repressor in forebrain development., Seufert DW, Prescott NL, El-Hodiri HM., Dev Dyn. February 1, 2005; 232 (2): 313-24.                  

Systematic screening for genes specifically expressed in the anterior neuroectoderm during early Xenopus development., Takahashi N, Tochimoto N, Ohmori SY, Mamada H, Itoh M, Inamori M, Shinga J, Osada S, Taira M., Int J Dev Biol. January 1, 2005; 49 (8): 939-51.                                    

The role of Pax2 in mouse inner ear development., Burton Q, Cole LK, Mulheisen M, Chang W, Wu DK., Dev Biol. August 1, 2004; 272 (1): 161-75.

Vegetal localization of maternal mRNAs is disrupted by VegT depletion., Heasman J, Wessely O, Langland R, Craig EJ, Kessler DS., Dev Biol. December 15, 2001; 240 (2): 377-86.    

Structure and expression of an Otx5-related gene in the dogfish Scyliorhinus canicula: evidence for a conserved role of Otx5 and Crxgenes in the specification of photoreceptors., Sauka-Spengler T, Baratte B, Shi L, Mazan S., Dev Genes Evol. December 1, 2001; 211 (11): 533-44.

Structural evolution of Otx genes in craniates., Germot A, Lecointre G, Plouhinec JL, Le Mentec C, Girardot F, Mazan S., Mol Biol Evol. September 1, 2001; 18 (9): 1668-78.

Otx genes in the development and evolution of the vertebrate brain., Boyl PP, Signore M, Annino A, Barbera JP, Acampora D, Simeone A., Int J Dev Neurosci. July 1, 2001; 19 (4): 353-63.

Cloning a novel developmental regulating gene, Xotx5: its potential role in anterior formation in Xenopus laevis., Kuroda H, Hayata T, Eisaki A, Asashima M., Dev Growth Differ. April 1, 2000; 42 (2): 87-93.            

Otx1 gene-controlled morphogenesis of the horizontal semicircular canal and the origin of the gnathostome characteristics., Mazan S, Jaillard D, Baratte B, Janvier P., Evol Dev. January 1, 2000; 2 (4): 186-93.

Xotx1 maternal transcripts are vegetally localized in Xenopus laevis oocytes., Pannese M, Cagliani R, Pardini CL, Boncinelli E., Mech Dev. January 1, 2000; 90 (1): 111-4.          

Activating and repressing signals in head development: the role of Xotx1 and Xotx2., Andreazzoli M, Pannese M, Boncinelli E., Development. May 1, 1997; 124 (9): 1733-43.                

Xotx genes in the developing brain of Xenopus laevis., Kablar B, Vignali R, Menotti L, Pannese M, Andreazzoli M, Polo C, Giribaldi MG, Boncinelli E, Barsacchi G., Mech Dev. April 1, 1996; 55 (2): 145-58.

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