[provisional- machine annotated only] Gene Symbol: rpe [Predicted: Source is Human Entrez Gene] Gene Name: ribulose-5-phosphate-3-epimerase [Predicted: Source is Human Entrez Gene] Synonyms: rpe2-1 Add Xenopus synonyms Gene Function: D-ribulose-5-phosphate 3-epimerase Interactants: pax6(13) , rax(12) , rho(7) , crx(6) , shh(6) , sox2(5) , calb1(4) View All

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001128024|Xenopus (Silurana) tropicalis ribulose-5-phosphate-3-epimerase (rpe), mRNA CGATCATGTCGTCTGGGTGCAAGATCGGTCCCTCTATCCTAAATAGCGATTTGTCACGCCTGGGGGCGGAATGCGATCGCATGTTGCAGAGCGGGGCAGATTATCTGCATCTGGATGTAATGGACGGGCATTTCGTTCCTAATATCACCTTTGGCCATCCTGTTGTAGAATGTCTGCGGAAACAACTTGGCAGTGATCCGTTTTTTGATATGCACATGATGGTTGCTCAACCAGAGCAGTGGGTGAAACCAATGTCAGCTGCTGGTGCCAACCAATATACATTCCATCTGGAAGCTACAAACAACCCTGGGGCCCTAATCAAAGACATTCGAGAGAGTGGCATGAAGGTGGGGCTGGCTATTAAGCCAAATACTACAGTGGAGTACCTTGCACCATGGGCAAACCAAATAGATATGGCTCTGGTTATGACTGTGGAACCTGGCTTTGGTGGGCAGAAGTTCATGGAGGATATGATGCCAAAGGTGCAATGGCTTAGGTCACAGTTTCCTTCATTGGATATTGAGGTTGATGGGGGTGTGGGACCAGACAACATTCACAGATGTGCAGAGGCTGGTGCAAATATGATTGTGTCTGGCAGTGCAATTATGAAGAGTGAAGACCCTCGCTCAGTGATTAAATTGCTTCGCACTGCATGTTGTGAAGCTGCCCAAAAACGCTCATTAGATCGGTGAAGCTAGGGAAGAATGGACATTCAGTCTCAGACCACGCAATATCCAGATTCAACTGAATTGGGGAGCAGGCCTGGAACAAAGATCAGGATGGCACTGTACTGGCCTTCTGGGCAACAGCTAAAATATTCCATGACAACTGAGATCAAGACAATAATACTGTGGGGGGTGTTTTTGTTGTTTTTTTTTTTTTTTTTTTTTAACTCTTGTCAGCAGTTGACAATTTCTGGAAAAACAGTACTTATTCTCTGGGAAAGGATAGTAAACGTTCCATAGTTTGGATAATTTGGATAACAAGCTTGTCATGCAGTCAAGTGTTATGACTACTGTACAAATAATTGCTGGGAAACTGGCACTGTGGCCTTGATGGATCTTTTGTTAAAGTTTATATCCTGGAACCAATAAATATTTAAGTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001094495|Xenopus laevis ribulose-5-phosphate-3-epimerase (rpe), mRNA CGTGAACCACGCTTTTACAGTCATGTCGTCTGGGTGCAAGATCGGTCCTTCCATCCTGAATAGCGATCTGTCTCGTCTGGCGGCGGAATGCGATCGCATGTTGCAGAGTGGGGCAGATTATCTACATCTGGATGTAATGGACGGGCATTTTGTTCCTAATATCACTTTTGGTCATCCTGTTGTAGAATGTCTGCGGAAGCAACTTGGCAGTAACCCATTCTTTGATATGCACATGATGGTTGCTCAACCAGAGCAGTGGGTGAAACCAATGGCAACTGCTGGTGCTAATCAGTATACGTTTCACCTGGAGGCCACAAATAACACTGGGGCCCTAATCAAAGACATTCGAGAGAGTGGCATGAAGGTGGGGCTGGCTATTAAGCCAAATACTACAGTGGAGTACCTTGCACCATGGGCCAACCAAATAGATATGGCTCTGGTTATGACTGTGGAACCTGGCTTTGGTGGGCAGAAGTTCATGGAAGATATGATGCCAAAGGTGCATTGGCTTAGGTCACAGTTCCCTTCTTTGGATATTGAAGTTGATGGGGGTGTGGGACCAGACAACATTCACAGATGTGCTGAGGCTGGTGCAAATATGATTGTGTCTGGCAGTGCAATTATGAAGAGTGAAGACCCGCGTTCAGTGATTAACTTACTTCGTACTGCATGCTGTGAAGCTGCCCAAAAACGCTCATTAGATCGGTGAAGATGGGAAAGAATGGACGTTCTGGTCCAGACAATATCCAGATTCAGCTAAACTGAGGAGGAGGCTGGGGCCAAAAATCAGGATGGCACTGTACTGGCCTTTGAGGCTGTAACAAAAATATTCCATGAAGACTCTGATAAAGACAATATTACAGTTTTTTTTTTTTTTTTTAACTCTTGTCAGTGGTTGACAAATCTGCAAAGTAGTCATTATTCTTTGGGAAAGGATAATAAATGTTCCATAGTTATCATCAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001121496|ribulose-5-phosphate-3-epimerase [Xenopus (Silurana) tropicalis] MSSGCKIGPSILNSDLSRLGAECDRMLQSGADYLHLDVMDGHFVPNITFGHPVVECLRKQLGSDPFFDMHMMVAQPEQWVKPMSAAGANQYTFHLEATNNPGALIKDIRESGMKVGLAIKPNTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVQWLRSQFPSLDIEVDGGVGPDNIHRCAEAGANMIVSGSAIMKSEDPRSVIKLLRTACCEAAQKRSLDR	Refseq >NP_001087964|ribulose-5-phosphate-3-epimerase [Xenopus laevis] MSSGCKIGPSILNSDLSRLAAECDRMLQSGADYLHLDVMDGHFVPNITFGHPVVECLRKQLGSNPFFDMHMMVAQPEQWVKPMATAGANQYTFHLEATNNTGALIKDIRESGMKVGLAIKPNTTVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRSQFPSLDIEVDGGVGPDNIHRCAEAGANMIVSGSAIMKSEDPRSVINLLRTACCEAAQKRSLDR

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase
Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.52890	Xl.18020
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	RPE
mouse		MGI	Rpe	All(1) Targeted, other(1)
zebrafish		ZFIN	rpe

Publications
First:		Rod photoreceptor disc shedding in eye cups: relationship to bicarbonate and amino acids. [Exp Eye Res 1983]
Most recent:		Cone photoreceptor and Müller cell pericellular matrices are binding domains for Interphotoreceptor Retinoid-Binding Protein (IRBP). [Exp Eye Res 2013]
		View All Papers 7 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		ribulose-phosphate 3-epimerase activity
Biological:		carbohydrate metabolic process
Cellular Component:
EC:		ribulose-phosphate 3-epimerase
KOG:		[G] D-ribulose-5-phosphate 3-epimerase

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.33173.1.S1_at	Xl.13006.1.A1_at
Affymetrix 2.0			Xl2.13006.1.S1_at [+] Xl2.18020.1.A1_at

Symbol legend[+]

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