odc1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (176)

Nucleotides (2183)

Interactants (738)

XB-GENEPAGE-478944

Gene Symbol: odc1 Gene Name: ornithine decarboxylase 1 Synonyms: xODC1, odc, ornithine decarboxylase Add Xenopus synonyms Gene Function: rate-limiting enzyme, polyamine biosynthesis pathway Interactants: t(58) , chrd(43) , myod1(34) , gsc(33) , bmp4(27) , nodal(27) , myc(26) View All

XB-GENE-478945

XB-GENE-856383

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001005441\|Xenopus (Silurana) tropicalis ornithine decarboxylase 1 (odc1), mRNA CTCAGCTCTGCGAGTGCTGGTTACGGATAGCTGAAGTGCCGTTTGTCCGAGGTGGTCTTTTTTTTCCTGCCTGGTTATTTGTGGCCTCGATGGGTACAGACTTCGTAAATGCTTTTTAAGAATACAAACAGCAGAACAGCGCAGAGCGGCTCCATCGAGAGCGTAGGACTTGTCCTCTACTTACCAGGCTTCTATTTCACCGGCGAGCCTCCTTGGGAGTGAAACTGAAGCTTTCTTTATAGTTATCCCCCATCTCTTACTTGTCCATTTTGTTGCATAGTTTGCCTCTTGAAACAAAATAACTGCAAAAATGAACAGCTTCAGCAATGACGACTTTGACTTCAGTTTCCTGGAGGAAGGTTTCTGTGCCAGGGATATTGTGGAGCAAAAGATCAATGAAGTGTCCTTATCTGATGACAAAGATGCCTTTTATGTTGCTGATCTTGGTGACATTGTGAAAAAGCATGTACGTTGGTTTAAAGCACTCCCACGTGTCACTCCATTTTATGCTGTAAAATGCAATGACAGCAAAGCCATCGTGAAGACTCTCTCCCTCCTTGGTGCAGGCTTTGACTGTGCCAGTAAGACGGAAATCCAACTAGTACAAAGTATTGGAGTGTCATCTGAGCGAATTATCTATGCAAATCCATGTAAACAAGTCTCCCAGATCAAATACGCAGCTAGCTGTGGTGTTGAGAAGATGACTTTTGACAGTGAAGTAGAACTAATGAAAGTGGCAAGGAATCACCCAAATGCAAAGCTTGTTCTGCGCATAGCAACTGATGACTCAAAAGCTGTCTGCCGCCTCAGTGTAAAATTTGGTGCCACCCTTAAAACAAGCAGGCTGCTTCTGGAGCGGGCAAAAGAGCTTAATGTGGAAATAATTGGTGTAAGTTTCCATGTTGGCAGTGGCTGCACTGATCCTCAGACTTATGTACAAGCTGTCTCAGATGCACGATGTGTCTTTGACATGGGGGCTGAGCTTGGATTCAGCATGCATTTACTTGACATTGGTGGAGGATTCCCTGGTTCAGAGGACGTTAAACTGAAGTTTGAAGAGATTACATCTGTGATAAACCCAGCCCTGGATAAGTACTTCCCAGTAGATTCTGGAGTGACCATCATTGCTGAGCCTGGGAGATACTATGTGGCCTCTGCTTTTACACTCGCAGTTAATATCATTGCCAAGAAAGTTATGGTGAATGAGCAAAGTGGATCTGATGATGAAGAGGATGCTGCCAATGACAAGACCCTGATGTACTATGTGAATGATGGCGTGTATGGATCTTTCAACTGCATCTTGTTTGATCATGCACATGTCAAGCCAGTTCTAACAAAGAAACCAAAACCAGATGAGAGCTTCTACTCAAGCAGCATTTGGGGACCAACCTGTGATGGACTGGATCGTATTGTGGAAAGGTTCGACCTGCCAGAGCTACAAGTTGGAGACTGGATGTTATTTGAGAACATGGGCGCCTACACTGTTGCTGCATCCTCAACATTCAATGGATTTCAGAGACCAACCCTTTATTATGTAATGTCAAGGCCACACTGGCAACTCATGCATGATATTAAAGAACATGGCATTCTCCCTGAAGTACCAGAACTGAGCGCACACCGTGTATCCTGTGCCCAGGAGAGTGGCATTGAGCTTGCCCCTACCATCTGTCCTACTGCCAGCATCAACGTATAGGCTTATTAACAAACGCTGTAGTTCAACTGCAACTGTAGTCTTGGGACCATTTATTTAAATTTAACTCATTCTTTTTTTCTAGATTGTATTTGCCAGCATTAATGCAACAAAATGGATGACTGTGAGATGGGGTCACATTATCTGTGTTCCTATGGAAACTTTTTTTTTATGTTTTTTGAAGTATATTGGAGATGCAAATTATCACTCAAGCATTTGTAGCTTGTGTATTGCCAGTCAGCATCTTCATTGACCAGTTTTACAAATAAAGTGTTCAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001086698\|Xenopus laevis ornithine decarboxylase 1 (odc1), mRNA ACGGATAGCTGTTAGGAGCTTTGTCAGAGGAAGTCTTTTTTTTTTTTCGCCTGGTTATTTGTGGCCTCGATGGGTACAGATTTCGTAAATGCTTTTTAAGAATACAAACAGCAGAACAGCGCAGAGTGGCTCCATTGAGAGCGTAGGACTTGTCCTCTACTTACCAGGCTTCTATTTCACCGGCGAGCCTCCTTGGGAGTGAGACTGAAGCTTTCTTTATAGTTATCCCCATCTCTTACTTGTCCATTTTTTTGCATAAGTTGCATTTTGAAACCGAATAATTGCAAAAATGAACAGCTTCAGCAATGACGACTTTGACTTCAGCTTCCTGGAGGAAGGCTTCTCTGCCAGGGATATTGTGGAGCAAAAGATCAATGAAGTGTCCTTATCTGACGACAAAGATGCCTTTTATGTTGCTGATCTTGGCGACATTGTGAAAAAGCATGTGCGTTGGTTTAAAGCGCTCCCCCGTGTCACTCCGTTTTATGCCGTAAAATGCAACGATGGCAAAGCCATTGTGAAGACTCTCTCCATTCTTGGTGCCGGCTTTGACTGTGCCAGTAAGACTGAAATCCAACTAGTACAGAGTATTGGAGTTTCCCCCGAGCGGATTATCTATGCAAACCCGTGTAAACAAGTTTCCCAGATCAAATACGCAGCTAGCTGTGGTGTGGAGAAGATGACTTTTGATAGTGAAGTTGAATTGATGAAAGTGGCAAGGAATCACCCGAATGCAAAGCTTGTTCTACGCATAGCAACTGATGACTCAAAAGCAGTCTGCCGCCTCAGTGTGAAATTTGGTGCCACCCTTAAAACAAGCAGGCTGCTTCTGGAGCGGGCAAAGGAGCTTAATGTGGATATAATTGGTGTGAGTTTCCATGTTGGCAGTGGCTGCACTGATCCACAGACTTATGTACAAGCTGTCTCAGATGCACGATGTGTCTTTGACATGGGGGCTGAGCTTGGCTTTAACATGCATCTACTTGATATTGGTGGTGGATTCCCTGGTTCAGAGGATGTGAAACTGAAGTTTGAAGAGATCACATCTGTGATAAACCCAGCCCTGGATAAATACTTCCCAGCAGATTCTGGCGTTAAAATCATTGCAGAGCCTGGGAGATACTATGTTGCCTCATCTTTCACCCTGGCAGTTAATATCATTGCCAAGAAAGTTATGGTGAATGAGCAAAGTGGATCTGATGATGAAGAAGATGCTGCCAATGACAAAACTCTGATGTACTACGTCAATGATGGAGTGTATGGATCTTTCAACTGCATCTTGTTTGATCATGCACATGTCAAGCCAGTTCTAACAAAGAAACCCAAACCAGATGAGAAGTTCTACTCGAGCAGCATTTGGGGACCAACGTGTGATGGGCTGGATCGTATCGTAGAAAGGTTTGAGCTGCCGGAGCTGCAAGTTGGAGACTGGATGTTGTTTGAAAACATGGGTGCCTACACTGTTGCTGCAGCCTCGACATTCAATGGATTTCAGAGACCAACCCTTTATTATGTTATGTCAAGACCACACTGGCAACTGATGCATGATATTAAAGAACATGGCATTCTCCCTGAAGTACCAGATCTGAGTGCACTCCATGTATCCTGTGCTCAGGAGAGCGGAATGGAACTTGCACCTGCTGTCTGTACTGCTGCCAGCATCAATGTATAGGCTTATTAACAAAACTCTGTAGTTAAACTGCAACTTTAGCCTTGGGACCATTATTTAAAAATTTAACTATTTTCATTTATTTTCCAAGCCTGTATTTGTCAGCATTAATGCAAAAAAATGGATGACTGCGAGATGGGGTCACATATCTGTGTTCCTATGGAAACTTTTTTTTTTTTTTCTAATGGTTTTTGAAGTATATTGAAGATGCTAATTATTTACTCAAGCATTTGTAGCTTGTGTTTTGCCAGTCAGCATCTTCATTGACCAGTTTTACAAATAAAAGTTCAAAAAAAAAAAAAAA
Protein		Refseq >NP_001005441\|ornithine decarboxylase 1 [Xenopus (Silurana) tropicalis] MNSFSNDDFDFSFLEEGFCARDIVEQKINEVSLSDDKDAFYVADLGDIVKKHVRWFKALPRVTPFYAVKCNDSKAIVKTLSLLGAGFDCASKTEIQLVQSIGVSSERIIYANPCKQVSQIKYAASCGVEKMTFDSEVELMKVARNHPNAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNVEIIGVSFHVGSGCTDPQTYVQAVSDARCVFDMGAELGFSMHLLDIGGGFPGSEDVKLKFEEITSVINPALDKYFPVDSGVTIIAEPGRYYVASAFTLAVNIIAKKVMVNEQSGSDDEEDAANDKTLMYYVNDGVYGSFNCILFDHAHVKPVLTKKPKPDESFYSSSIWGPTCDGLDRIVERFDLPELQVGDWMLFENMGAYTVAASSTFNGFQRPTLYYVMSRPHWQLMHDIKEHGILPEVPELSAHRVSCAQESGIELAPTICPTASINV	Refseq >NP_001080167\|ornithine decarboxylase 1 [Xenopus laevis] MNSFSNDDFDFSFLEEGFSARDIVEQKINEVSLSDDKDAFYVADLGDIVKKHVRWFKALPRVTPFYAVKCNDGKAIVKTLSILGAGFDCASKTEIQLVQSIGVSPERIIYANPCKQVSQIKYAASCGVEKMTFDSEVELMKVARNHPNAKLVLRIATDDSKAVCRLSVKFGATLKTSRLLLERAKELNVDIIGVSFHVGSGCTDPQTYVQAVSDARCVFDMGAELGFNMHLLDIGGGFPGSEDVKLKFEEITSVINPALDKYFPADSGVKIIAEPGRYYVASSFTLAVNIIAKKVMVNEQSGSDDEEDAANDKTLMYYVNDGVYGSFNCILFDHAHVKPVLTKKPKPDEKFYSSSIWGPTCDGLDRIVERFELPELQVGDWMLFENMGAYTVAAASTFNGFQRPTLYYVMSRPHWQLMHDIKEHGILPEVPDLSALHVSCAQESGMELAPAVCTAASINV UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.11690 [+] Str.19826 Str.26197 Str.37377 Str.43763	Xl.4223 [+] Xl.32389 Xl.59433
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		3 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	ODC1	OMIM:114500
mouse		MGI	Odc1	All(3) Targeted, other(3)
zebrafish		ZFIN	odc1	4 Lines(s)

Publications
First:		Putrescine and spermidine biosynthesis in the development of normal and anucleolate mutants of Xenopus laevis. [Proc Natl Acad Sci U S A 1971]
Most recent:		Expression of the tetraspanin family members Tspan3, Tspan4, Tspan5 and Tspan7 during Xenopus laevis embryonic development. [Gene Expr Patterns 2013]
		View All Papers 71 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		catalytic activity ornithine decarboxylase activity
Biological:		polyamine biosynthetic process
Cellular Component:
EC:		ornithine decarboxylase
KOG:		[E] Ornithine decarboxylase

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.6672.1.S1_at [+] Str.11516.1.S1_at Str.19826.1.A1_at Str.26197.1.A1_at Str.43763.1.A1_at Str.11690.1.A1_at	Xl.4223.1.S1_a_at [+] Xl.4223.1.S1_at Xl.4223.2.S1_at
Affymetrix 2.0			Xl2.4223.1.S1_a_at [+] Xl2.4223.3.S1_at Xl2.4223.3.S1_a_at

Symbol legend[+]