hdac1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (20)

Interactants (32)

XB-GENEPAGE-479582

Gene Symbol: hdac1 Gene Name: histone deacetylase 1 Synonyms: HD1, rpd3, gon-10, rpd3l1 Add Xenopus synonyms Gene Function: regulation of gene expression Interactants: hdac3(12) , sin3a(8) , rbbp4(4) , ncor1(3) , lef1(2) , mbd3(2) , aurka(1) View All

XB-GENE-479583

XB-GENE-6252325

XB-GENE-865283

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 4.1 Ensembl
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001030393\|Xenopus (Silurana) tropicalis histone deacetylase 1 (hdac1), mRNA CTAAGTCGTAGTAGGTCCAAGCCGCGGAAGGAAAATGGCGCTGAGTCAAGGAACAAAGAAGAAAGTGTGCTATTACTATGATGGTGATGTTGGAAATTATTATTATGGACAGGGGCATCCCATAAAACCTCATAGAATTCGTATGACACACAACCTGCTGCTGAACTATGGACTTTACCGGAAAATGGAGATCTATAGACCCCACAAAGCCAGTGCAGAAGAGATGACAAAGTATCACAGTGATGATTATATAAAATTCCTGCGCTCCATACGACCAGACAATATGTCCGAATACAGTAAACAGATGCAGAGATTTAATGTTGGTGAGGACTGTCCAGTGTTTGATGGCTTGTTTGAATTCTGCCAACTCTCCACGGGGGGCTCTGTAGCAAGCTCTGTTAAACTAAACAAACAACAGACGGACATTTCAGTAAACTGGTCTGGTGGCCTTCATCATGCCAAGAAATCTGAGGCATCTGGTTTTTGTTATGTCAACGATATTGTCCTTGCCATCCTGGAACTATTGAAGTATCACCAGAGAGTTCTGTATATTGATATAGACATTCACCACGGTGATGGTGTGGAGGAGGCCTTTTACACAACTGATAGAGTTATGACAGTATCCTTCCACAAGTATGGAGAGTATTTTCCTGGAACTGGTGATCTGAGAGATATTGGTGCAGGGAAAGGCAAATATTATGCTGTGAATTATCCCTTACGGGATGGAATTGATGATGAGTCCTATGAAGCAATTTTTAAACCAGTAATGTCTAAAGTTATGGAGATGTACCAGCCCAGTGCAGTGGTCCTACAGTGTGGAGCAGATTCCTTATCCGGGGATAGACTTGGATGTTTCAATTTGACCATCAAAGGACATGCCAAGTGTGTGGAGTTCATAAAGACCTTTAACTTGCCACTGCTTATGCTAGGAGGTGGAGGTTACACTATCAGGAATGTGGCTCGTTGCTGGACATATGAAACAGCTGTGGCTCTGGACTCTGAGATCCCTAATGAGCTTCCATACAATGATTATTTTGAATATTTTGGGCCAGACTTCAAGCTTCATATCAGTCCATCCAACATGACCAATCAGAACACTAATGAATATCTGGAGAAAATCAAGCAGCGCCTTTTTGAGAACTTGCGCATGCTTCCTCATGCTCCAGGAGTCCAGATGCAAGCCATCCCAGAGGACTCTGTACATGATGACAGTGGTGAAGAAGATGAGGAAGATCCTGACAAGCGCATTTCCATTCGGTCATCGGATAAAAGGATTGCGTGTGATGAGGAGTTCTCTGATTCTGAAGATGAAGGGGAAGGAGGTCGCAGAAACGTGGCCAGTTTCAAGAAAGTAAAACGGGTTAAAACAGAGGAGGAAAAGGATGGAGAAGAAAAGAAAGATGTTAAAGAAGAGGAGAAACCTAAAGATGAGAAGACAGACAGCAAACGGGTAAAAGAAGAGACCAAATCTGCCTGATCCTTCATGTATGGGGAAGAAGTCCCAAGACCAATGAATTCCTATGGTTTTATATTTTATATATGCCCTGTACAGAACCCTTTCTATAAAAGTCCCAGCACAGGCTAAATTATTCTCCCCCCCCACCCCCCCCCCCCCCCACCCCAACTTGTTTACATATTATTTATTATTCTATGACTTGAATGCATTTATATTATATTTGTATTATTTCACTGTGATCCACATTGTTTTGTTATTATATTGTGTTTATAGTGTATTCTGGTTTCCTTGAAGGTCCCATTTATATGTCTGTTTGTTGTTAAACCTTAAATAACAATAAAAAGGGAAAGAAAACCCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001088022\|Xenopus laevis histone deacetylase 1 a (hdac1-a), mRNA AGCGTTCCCCTTACGTCATTAGTGGGCGGTCCACCCTGTGATTGGCCGGGCCTTGTAAGCACGTATCCTGACTCCGCGCCGGTCAAAGTAGTAGTAGGTCTTAGACGCGGAAGGAAAATGGCGCTGACTCTAGGAACAAAGAAGAAAGTGTGCTACTACTATGATGGTGATGTTGGAAATTATTATTATGGTCAAGGGCATCCCATGAAACCTCATAGAATTCGCATGACACACAACCTGCTGCTCAACTATGGACTTTACCGAAAAATGGAAATCTTTAGGCCCCACAAAGCCAGCGCCGAGGATATGACAAAGTATCACAGTGATGATTATATCAAATTCCTGCGCTCCATACGACCAGACAATATGTCCGAATACAGTAAACAGATGCAGAGATTTAATGTTGGTGAGGACTGTCCTGTGTTTGATGGCCTATTTGAGTTCTGCCAGCTCTCTGCAGGGGGTTCTGTAGCAAGTGCTGTTAAACTAAACAAACAGCAGACTGACATTTCAGTGAACTGGTCTGGTGGCCTTCATCATGCAAAGAAATCTGAGGCATCTGGTTTTTGTTATGTCAACGATATTGTCCTTGCCATCCTGGAACTACTAAAGTATCACCAGAGAGTTGTGTATATTGATATAGACATTCACCACGGTGATGGTGTTGAGGAGGCATTTTACACAACCGATAGGGTTATGACTGTGTCCTTCCATAAGTATGGAGAGTATTTTCCTGGAACTGGAGATCTGAGAGATATTGGTGCAGGGAAAGGCAAATACTATGCTGTAAATTATGCCTTACGGGATGGGATTGACGATGAGTCCTATGAAGCAATTTTTAAACCAGTAATGTCCAAAGTTATGGAAATGTTTCAGCCCAGTGCAGTGGTCTTACAGTGCGGAGCAGATTCATTATCTGGGGATAGACTTGGATGCTTCAATTTGACCATTAAGGGACATGCGAAGTGTGTGGAGTTTATAAAGACCTTTAACTTGCCACTGTTGATGTTAGGAGGTGGAGGTTACACTATCCGGAATGTGGCTCGTTGCTGGACATATGAAACAGCTGTGGCTCTGGACTCTGAGATCCCCAATGAGCTTCCATATAATGATTATTTTGAATATTTTGGTCCGGACTTCAAGCTTCACATCAGCCCATCCAACATGACTAATCAGAACACTAATGAATATCTGGAGAAAATTAAGCAGCGCCTCTTTGAGAACTTGCGCATGCTCCCCCATGCTCCTGGAGTTCAGATGCAAGCCGTTGCAGAGGACTCCATACACGATGACAGTGGTGAAGAAGATGAAGATGATCCCGACAAGCGTATTTCAATTCGGTCATCAGATAAAAGGATTGCCTGTGATGAGGAGTTCTCAGATTCTGAGGATGAAGGGGAGGGAGGTCGCAAAAACGTGGCCAATTTCAAAAAAGTAAAACGGGTTAAAACTGAAGAGGAAAAGGAAGGAGAGGACAAGAAAGATGTTAAAGAAGAGGAGAAAGCTAAAGATGAGAAGACGGATAGCAAACGGGTAAAAGAAGAGACCAAATCAGTCTGATCCTTCAACTATGGGGAGAAAATCCGAAGACCAAACTAATTCTCATGGTTTTATATTTTGTATATGCCCTGTACAGAGCCCTACTATGAAATATAAGTCCACACATTCTAAATTATTTCTGTCCCACTGGTTGAGGGGGGGTGAAGTGGTCGCTGTAGTGGATTAAGCTTCACATCTGTTACCTTTTTTTAAGATTCACATCTGTTACCTTTTTACCAGATGTTTCCAGCTCTTTGGCTTTTTTTTTTTTTTTGACCAAAAACTTTCCATGTTTTCCTATGCCTCTGTAATCTTCGGTGGTGCAATGCATTACGGATTTATTTCCCTGCTCCCTTCTATACACACTTTTGCTGTCAGACTACAAGACTTTTTTGCTACAGTACATTGGAAATATGTACACTTTATGCTCAGGATCAGGCAGTGAGAAGGAGGTGGGTTCCAGCTGTCTTCCAAATGAATTTGAGAGGGTTACCTTGAGGGATGGAAGGGGGAAGCTGAAGCTCCTCTTAAACTAAACTATTCAGGGATTCCCTGTTCTCTTAATGCTGCTAACCCTCCTCCAGATTAGTTCATGAAGCAGATTTTTAGATGTGTGGAAACCTGGTCCACAGTTACCTTATAATGGGGATTGTGGGGATTTGCAATTTGGGTTTCTGCCTTTAATCTTAGTGGGTTGGAGAGTGTCTGGATTCATGGAGTGAAGAAAATGGAGAATTTTTATGTCTAATTTTTGTGATGGGAAATTTCTTTTTTTTTTTTTATGGTTGAGTTGTAGAAAAGCTTTGTAATAAAATCTGGTACTTATAAAAAAAAAAAAAAAA		Refseq >NM_001085927\|Xenopus laevis histone deacetylase 1 b (hdac1b), mRNA AGCCGCCGAAGGAAAATGGCGCTGAGTCAAGGAACAAAGAAGAAAGTGTGCTATTACTATGATGGTGATGTTGGAAATTATTATTATGGACAGGGGCACCCAATGAAACCTCATAGAATTCGCATGACACACAACCTGCTGCTCAACTATGGACTTTACCGGAAAATGGAGATCTATAGACCACACAAAGCCAGTGCAGAGGAGATGACAAAGTATCACAGTGATGATTATATCAAATTCCTGCGCTCCATACGACCAGACAATATGTCTGAATACAGTAAACAGATGCAGAGATTTAATGTTGGTGAGGACTGTCCTGTGTTTGATGGCCTATTTGAGTTCTGCCAGCTCTCTACAGGAGGCTCTGTAGCAAGTGCTGTTAAACTAAACAAACAACAGACGGACATTTCAGTGAACTGGTCTGGTGGCCTTCATCATGCCAAGAAATCTGAGGCATCTGGTTTTTGTTATGTCAACGATATTGTCCTTGCCATCCTGGAACTACTTAAGTATCACCAGAGAGTTGTGTATATTGACATAGACATTCACCACGGTGATGGTGTTGAGGAGGCATTTTACACAACTGATAGGGTTATGTCAGTGTCTTTCCACAAGTATGGAGAGTATTTCCCTGGAACTGGAGATCTGAGAGATATTGGTGCAGGGAAAGGCAAATACTATGCTGTGAATTACCCCCTACGGGATGGGATTGATGATGAGTCCTATGAAGCAATTTTTAAACCAGTGATGACCAAAGTTATGGAGATGTTCCAGCCCAGTGCAGTGGTCCTACAGTGTGGAGCAGATTCATTATCTGGGGATAGACTTGGATGCTTCAATTTGACCATCAAAGGACATGCCAAGTGTGTGGAGTTCATAAAGACCTTTAACTTGCCAATGCTGATGCTAGGAGGTGGCGGTTACACTATCAGGAATGTGGCTCGTTGCTGGACATATGAAACGGCTGTGGCTCTGGACTCCGAGATCCCTAATGAGCTTCCATACAATGATTATTTTGAATATTTTGGACCGGACTTCAAACTTCACATCAGTCCATCCAACATGACCAATCAGAACACTAATGAATATCTGGAGAAAATCAAACAGCGCCTCTTTGAGAACTTGCGCATGCTCCCCCATGCTCCAGGAGTTCAGATGCAAGCCATCCCAGAGGACTCTGTACATGATGACAGTGGTGAAGAAGATGAAGAAGATCCTGACAAGCGCATTTCCATTCGGTCATCCGATAAAAGGATTGCGTGCGACGAGGAGTTCTCAGATTCTGAGGATGAAGGGGAGGGAGGTCGCAGAAACATGGCCAGTTTCAAGAAACTAAAACGGGTTAAAACAGAAGAGGAAAAGGAAGCAGACGACAAGAAAGATGTTAAAGAAGAGGAGAAACTTAAAGATGACAAGACAGACAGCAAACGGGTAAAAGAAGAGACCAAATCAGCCTGATCCTACAAGTACGGGGAGAAAATCCCAAGACCAAACAAATTCTCATAGTTTCATATATGCCCTGTACAGAACCACTTCTATATCCTATCCCAGCACAGGCTAAATTATTCGTGTCGGGGGGGTGAAATGGTAATTTAGTGGATTAGTTAAATTTCACATCTGTTACCAGATGTTTCCAGCTCTTTACCTTTCCTTTTTTATATAAAAATGTTCCACATATTCCTGTGCCTCTGTAATCATCAGTGGTGCAATGCATTGTGGATATATTTCTCTGTTCCTTCCATATACACATCTCCTGTCAGACAACAAGACATGTCTGCTACAGTACATTGAGAATATGTACACCTTATGCTCAGGATTAGGCGGTGGGGAGGGGGGGTCCAGCCGTCTTCCAAATTGGTTTGAGAGGGTTGGTTGTTTCCTCAAGGGATGGGGAGAAACTGAAGGTCCTTTCTTCCACTAAACTATTCAGGGATTCCCTGTTCTCTTAATGCTGCTAACCCTCCTCCAGATTAGTGCATGAAGCAGATTCTTAGATGTGGGGAAACCTGTTCCACAGTTACCTCATACTGGGGATTGTGGGTATTGCAATTGGGGTTTCTACCATTAATCATAGCGGGTTGGAGAGTTTGGGGATTCATGGAGTGAAGGAAATGGAGAATTTTTATGTCCAATTTTTGTGATGGGAAATTTCTTTTTTTTTATGGTTTGAGTTGTGGAAAAGATTTGTAATAAAACCTGGTACATATAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001025564\|histone deacetylase 1 [Xenopus (Silurana) tropicalis] MALSQGTKKKVCYYYDGDVGNYYYGQGHPIKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASSVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMSKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRRNVASFKKVKRVKTEEEKDGEEKKDVKEEEKPKDEKTDSKRVKEETKSA	Refseq >NP_001081491\|histone deacetylase 1 a [Xenopus laevis] MALTLGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKASAEDMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYALRDGIDDESYEAIFKPVMSKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAVAEDSIHDDSGEEDEDDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRKNVANFKKVKRVKTEEEKEGEDKKDVKEEEKAKDEKTDSKRVKEETKSV UniProtKB		Refseq >NP_001079396\|histone deacetylase 1 [Xenopus laevis] MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKASAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVASAVKLNKQQTDISVNWSGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVVYIDIDIHHGDGVEEAFYTTDRVMSVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAIFKPVMTKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEFIKTFNLPMLMLGGGGYTIRNVARCWTYETAVALDSEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLEKIKQRLFENLRMLPHAPGVQMQAIPEDSVHDDSGEEDEEDPDKRISIRSSDKRIACDEEFSDSEDEGEGGRRNMASFKKLKRVKTEEEKEADDKKDVKEEEKLKDDKTDSKRVKEETKSA

Genomic

tropicalis

Genome Browser

Synteny

Xenbase G-Browse

GBrowse

Expression		tropicalis	laevis a		laevis b
UniGene		Str.64824	Xl.47990		Xl.20805
Gurdon EST/FL		CABK7885	IMAGE:6640932
Affymetrix 1.0		Str.39928.2.S1_at [+] Str.39928.1.S1_a_at	Xl.1114.1.S1_at		Xl.20805.1.S1_at [+] Xl.20805.1.S2_at
GEO data			GEO		GEO

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene	HDAC1
mouse		MGI	Hdac1	All(9) Targeted, other(6) Targeted, knock Out(2) Chemically Induced(1)
zebrafish		ZFIN	hdac1	22 Lines(s)

Publications
First:		Xenopus HDm, a maternally expressed histone deacetylase, belongs to an ancient family of acetyl-metabolizing enzymes. [Gene 1997]
Most recent:		Xenopus skip modulates Wnt/beta-catenin signaling and functions in neural crest induction. [J Biol Chem 2010]
		View All Papers

Functional Ontologies
GO: Molecular:		acetylspermidine deacetylase activity histone deacetylase activity
Biological:		histone deacetylation
Cellular Component:		nucleus
EC:		acetylspermidine deacetylase
KOG:		[B] Histone deacetylase complex, catalytic component RPD3

Suppliers		tropicalis	laevis a		laevis b
Clones		open biosystems	open biosystems		open biosystems
		geneservice	geneservice		geneservice
		RZPD imagenes	RZPD imagenes		RZPD imagenes

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