amd1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (10)

Interactants (7)

XB-GENEPAGE-484610

Gene Symbol: amd1 Gene Name: adenosylmethionine decarboxylase 1 Synonyms: mgc53431, AdoMetDC, S-adenosylmethionine decarboxylase, samdc Add Xenopus synonyms Gene Function: polyamine biosynthetic enzyme Interactants: bcl2(4) , casp9(3) , casp8(2) , tp53(2) , casp1(1) , fst(1) , odc1(1) View All

XB-GENE-484611

XB-GENE-484615

Molecules		tropicalis	laevis
Gene		JGI XT Genome 4.1 Ensembl
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001017143\|Xenopus (Silurana) tropicalis adenosylmethionine decarboxylase 1 (amd1), mRNA CTAGCGCTCGCTCAGCCGCGTTCTCTGTAACAGGGAATAAAACAGGAAAAAAAGAGACTTTACCGGAGAAATTAACTATCCATCGTTAACAACACCTCCTAGAAATCAACGATAATATTCGAATGCCACCTTCCAAAATTATAATAAAGTAATTATCGACGTAAAATATTTAAAGGCTAAATTTCAAATCTAATATAATTAGAAACTACGAATTATTTTAAGTAAAGGACCAGAAAAAAAGAACCGGGAAGGACATTATCAGCAGGTAGTTATTTTTTTCCGTTTGAAGTTATTTTCTGCGTTGTCGGTGGGTCTCCGGCTGCCCGAGGAGGGAGAGGCGGGCGAGAAGATGAAGATGGAGGAGAGCGCCGCGCACTTCTTTGAGGGAACAGAGAAGCTGCTGGAAGTCTGGTTTAGCCAGCAGGACGAGAGCAAAGGTTCCGGGGACCTCCGTGACATCCCAAGGTTTGAGTGGGACAAACTTTTGGAGAATGTGCATTGTTTGATCATAAGTGTGACGAAAACTGACAAGCAGGAAGCTTATGTACTCAGTGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAGACATGTGGTACCACCCTCTTACTGCAAGCACTGGTTCCCCTGTTAGAGCTCGCCAGAGAGTATTGCGGGTTTGATGGCATCCAAAATTTTTTTTATTCCCGCAAGAATTTTATGAAACCAGACCATCAAGAATACCCGCATAGGAATTTCCAGGAAGAAGTTGAATTCCTAAATCAAATTTTCCCTAATGGAGCAGCATATTGCATGGGGCGAATAAATTCTGATTGCTGGTATTTGTATACTCTGGACATTCCAGATGGATATGTTATCAATCAACCAGATCAGACACTGGAAATTCTAATGAGTGAGCTTGACCCAGAAGTTATGGACCAGTTTTACATGAAAGAGGGTGTTACTGCAAATGATGTCACTCGTGTGAGTGGAATTCGTGACCTGATAACAGGTTCTGTCATTGATGCTACAATGTTCAGCCCTTGTGGTTATTCGATGAATGGGATGAAATCAGATGGAACTTACTGGACTATTCACATCACTCCAGAACCAGAATTTTCATATGTTAGTTTTGAAACAAATGTATCCTTAACAACCTACGATGATCTGATTAGTAAAGTTGTGGATGTTTTCAAGCCAAGGAAATTTGTGACCACCCTCTTTGTTAATCAGAGTTCCAAATGTCGGACAGCATTCAGTTGCGCTCAGAAGATTGAAGGCTTTAGACGTCTGGATCGCCAGTTTGCGCAGTTCAATGACTACAATTTTGTTTTCACCAGTTTTGCCAAGATCCAACCACAGCAGAGTTGATTAGAAATAATGAAGAAGAAACGCAAAAAGAAAACTAATGGTAGAGGTGGTGGGTGCTTTTTAGATACCGGGGGCCATGCTTTCTACATCCATCACCTAGTAGTTGCTGAAAGCCCTAAATATATTCCTAGTATGAGTTTAAATTGTATCCATTATTATAACAAGGAGATAGATAACTTGCATGAATGCTCTCTCCAGTGTGTAGGTATTCTATGCCACTCTTGCTGTGAAATTAAAGTGCATGTAGATGCGTTAAACACAGACTGTATGAGACTCAACAGCACATGTAAAAATGCACATTGTTCTACACATTGCATCTGTTTTTTACAGGTGTCTCCAAAAATTTGCCACAGACAAGGTTTCCGCCCACCATAATTTTGGTCCCAGAATTAAATCATATTTTAGGCTTGGTGTTCTCCTACATTCAGGCCTGTAGTTCAGGGCTGTAGGTAATTTCTTTTCACTGTTAACAACAATAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001086891\|Xenopus laevis adenosylmethionine decarboxylase 1 (amd1), mRNA GCGATATTAGCTAGCGCTCGCTCAACCGCGTTCTCTGTAACGGGGAATAAAACAGGGAAAAAAAAAATAGACTTTAGCGGAGAATTTAACTATCCATCGTAAACAACAACGATAATATCCGAACGTCACCTTCAATAAAGCAATTATCGGCGTAAAATATTTACAGGCTGAATTTCAAATCTAATTAGAAGCTAAGAATTCTATTTAAGTAACGGACCAGAAAAAAAAAAAAAAGAACCGAGAAGGAAATTATCAGCAGGTAGTTATTTTTTTCCGTTTGAAGTTATTTTCTGCGTTGTCGGTGGGTCTCCGGCTGTCCGAGGAGAGAGAGAGAGAGAGAGGCGGGCGACAAGATGAAGATGGAGGAGAGCGCCGCGCACTTCTTTGAGGGAACCGAGAAGCTGCTGGAGTTGTGGTTTAGCCAACAGGACGCGAGCAAAGGATCCGGGGACCTCCGTGACATCCCAAGGTTTGAGTGGGACAAACTTTTGGAGAATGTGCATTGTTTGATCATAAGTGTGACGAAAACTGACAAGCAGGAAGCTTATGTACTCAGTGAGAGTAGCATGTTTGTCTCCAAGAGACGTTTCATTTTGAAGACATGTGGTACCACCCTCTTACTGCAAGCACTGGTTCCCCTGTTAGAGCTCGCCAGAGAGTATTGCGGGTTTGATGGCATCCAAAACTTTTTTTATTCCCGCAAGAATTTTATGAAACCAAACCATCAAGAATACCCGCATCGGAATTTCCACGAAGAAGTTGAATTCCTAAATCAAATTTTTCCCAATGGAGCAGCATATTGCATGGGGCGAATAAATTCTGATTGCTGGTATTTGTATACTCTGGACATTCCAGATGAATATGTTATCAGTCAACCAGATCAGACACTGGAAATTCTAATGAGTGAGCTTGACCCAGAAGTTATGGACCAGTTCTACATGAAAGAGGGTGTTACTGCAAATGATGTCACTCGTGTGAGTGGAATTCGTGACCTGATAACAGGTTCTGTCATTGATGCTACAATGTTCAGCCCTTGTGGTTATTCAATGAATGGGATGAAATCAGATGGAACTTACTGGACTATTCACATCACTCCAGAACCAGACTTTTCATATGTTAGTTTTGAAACAAATGTATCTCTAACAACCTACGATGATCTGATTAGTAAAGTTGTGGATGTTTTCAAGCCAAGGAAATTTGTGACCACCCTCTTTGTTAATCAGAGTTCTAAATGTCGTACAACATTCAGTTGTGCTCAGAAGATTGAAGGCTTTAGACGTGTGGATCGGCAGTTTGCGCAGTTCAATGACTACAATTTTGTTTTCACCAGTTTTGCCAAGATCCAGCCACAGCAGAGTTGATTAGAAGTAATGAAGAAGAAACGCAAAAAGAAAACTAATGGTAGAGGTGGTGGGTGCTTTTTAGATACCGGGGGCCATGCTTTCTACATCCATCACCTAGTAGTTGCTGGAAGCCCTAAATATAATCCTAGTATGAGTTTAAATTGTATCCATTATTATAACAAGGAGATAGATAACTTGCATGAATGCTCTCTCCCGTGTGTAGGTATTCTATGCCACTCTTGCTGTGAAATTAAAGTGCATGTAGATGCGTTAAACACAGACTGTATGAGACTCAATAGCACATGTAAAAATGCACATTGTTGTACACATCGCATCTGTTTTTTACAGGCATCTCCAAAAATTCACCACAGACAAGGTTTTCGGCCACCCTAATTTTGGTCTTAGAATTAAATTGCATGGTAATCCTCATACAATCAGGCCTGTATTGCAGGGCCATGAGTAGTATTTTTTTTCACTGTAAAAAAACTGTTTTATTACAAAATCCAACAGTTTGGTGCTAGCACCTGCTCAAGTTATTTCTTTGGAGTGGATTTATATCCTTTCAATGTATTTCACTGATGGTGCTAGGCTTATTACAGAAACATCATTCATTAAAACAGTAGAGATACGCTAGTGATAGGATAAATTGATGCAGGAAAGATCAACCTCATGAAATCTAACATGATCCAGGCCTTTTTGTCTTTAACTGGAGTGTTCTCTGCAAAACATTAGCTGTTTCTAACTGTAAACAATATGCTGTAACCCAGCTCAGATCCTGCTCCAGTTTGCATCCCATTTGAAATCAATGCCTTTTCATCTGTCTAAAAAGGAAACCTGTGACATTGTGCATGTGACAACTATGCTGTATTTGGCAGTGCTGTAACCTCATGCACTCTCCCTTGTGAATTGGTGTGGTGATTTCCTTTATACCATGATTAGGTAGCTTTATGTGATGAACATTGGGACTTACTGGGACAGCTCAAATGCTTAGGCTTCGTTATTTTGTAATTCAATTGGAAATGAATTGTTGGTTAGCCTTAGTTAGATAAGGCTTTCCAAAACTTGCCTAGCTCTGAACTGACCTCTTGAACTGTTTTGACATTCCCACTGTCTTTCTGTAATACTGTCTATATCCTTTTGCATATAGTTCAGTTATATTCCATGTCTTTATCAACACTTTTTATAGTGTTTAGAACAATAATATAGGGGTTGTACCATCTGTTATTTTTTGTAAGCATACATTTTTTTTAAAGCTTTCTGTTGCTCCTCTGGGATATTTCTAGTGCTTCTTTTTGAGGACCAATATTTTGCATAGTTAATGTTTTTGCTGTCTAAATAACGCAAACCCCTTAAACAATGGGCTGCAATTGTAGCAGGTTTCAGAGTATGAGCATGGTCATGGTGATGACATCCCAAACAGACATTGTATTTGGCTGCCTTTTATCAAAGTCACATGATTCCCATGCCTGTAAAATGCAACCTGTTGGAAGATGAATTCTGTTAAAGTCGGTTTGGGAAAGCATTTTCCATAAGGGTTTATACATTGAAAAGTCCATTATATTGCACTATACTGAATCATCCCTAGGTACTATGTACACATCAAAAGAAACAATTGAAAACTAAAAAATGATGTTCTCTTGGGGAGAGGGGAGTTTGTCTCAAATCTTTGTTAAACTCTTGATCAATTGTAATGTACTTAAAATCTCTGTACCATCTACCTAATGCTTAAATAAAACAGTGCTTAATTAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001017143\|adenosylmethionine decarboxylase 1 [Xenopus (Silurana) tropicalis] MKMEESAAHFFEGTEKLLEVWFSQQDESKGSGDLRDIPRFEWDKLLENVHCLIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLQALVPLLELAREYCGFDGIQNFFYSRKNFMKPDHQEYPHRNFQEEVEFLNQIFPNGAAYCMGRINSDCWYLYTLDIPDGYVINQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSGIRDLITGSVIDATMFSPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFETNVSLTTYDDLISKVVDVFKPRKFVTTLFVNQSSKCRTAFSCAQKIEGFRRLDRQFAQFNDYNFVFTSFAKIQPQQS	Refseq >NP_001080360\|S-adenosylmethionine decarboxylase proenzyme precursor [Xenopus laevis] MKMEESAAHFFEGTEKLLELWFSQQDASKGSGDLRDIPRFEWDKLLENVHCLIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLQALVPLLELAREYCGFDGIQNFFYSRKNFMKPNHQEYPHRNFHEEVEFLNQIFPNGAAYCMGRINSDCWYLYTLDIPDEYVISQPDQTLEILMSELDPEVMDQFYMKEGVTANDVTRVSGIRDLITGSVIDATMFSPCGYSMNGMKSDGTYWTIHITPEPDFSYVSFETNVSLTTYDDLISKVVDVFKPRKFVTTLFVNQSSKCRTTFSCAQKIEGFRRVDRQFAQFNDYNFVFTSFAKIQPQQS UniProtKB

Genomic

tropicalis

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Synteny

Xenbase G-Browse

GBrowse

Expression		tropicalis	laevis
UniGene		Str.665	Xl.7078
Gurdon EST/FL		CABC2268	XL469h03ex
Affymetrix 1.0		Str.665.1.S1_at [+] Str.665.1.S2_at Str.43220.1.S1_at Str.43220.1.S1_s_at	Xl.7078.1.S1_at
GEO data			GEO

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene	AMD1
mouse		MGI	Amd1	All(1) Targeted, knock Out(1)
zebrafish		ZFIN	amd1

Publications
First:		Down-regulation of ornithine decarboxylase by an increased degradation of the enzyme during gastrulation of Xenopus laevis. [Biochim Biophys Acta 1995]
Most recent:		Effects of S-adenosylmethionine decarboxylase, polyamines, amino acids, and weak bases (amines and ammonia) on development and ribosomal RNA synthesis in Xenopus embryos. [Amino Acids 2010]
		View All Papers

Functional Ontologies
GO: Molecular:		adenosylmethionine decarboxylase activity
Biological:		spermidine biosynthetic process spermine biosynthetic process
Cellular Component:
EC:		adenosylmethionine decarboxylase
KOG:		[T] S-adenosylmethionine decarboxylase

Suppliers		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice	geneservice
		RZPD imagenes	RZPD imagenes

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