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Summary Expression Gene Literature (11) Nucleotides (53) Proteins (17) Interactants (62) Wiki
XB-GENEPAGE-485229

Gene Symbol: otp

Gene Name: orthopedia homeobox

Synonyms:
Add Xenopus synonyms , Nomenclature history

Gene Function: homeodomain transcription factor

Interactants: nkx2-1(6) , shh(5) , nkx2-2(4) , isl1(3) , sst(3) , tbx2(3) , chrd(2) View All

OMIM Disease Associations:
 
Xenbase Gene ID XB-GENE-485230 XB-GENE-6489050 XB-GENE-17334383
Gene Symbol otp otp.L otp.S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 GBrowse 6.0 GBrowse 9.1
Entrez Gene
mRNA NCBI Nucleotide
Protein NCBI Protein
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v7.1 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene [+]
RNA-seq profile: Owens, Blitz et al. 2016 otp
Images 2 expression image(s) for tropicalis and laevis
Data Mining
XenMine otp otp.L otp.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards OTP OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Otp MGI, IMPC Ensembl, Eurexpress, MGI
zebrafish
ZFIN ZFIN otpb otpa ZFIN Ensembl
chicken
GEISHA OTP Ensembl
fruit fly
FLYBASE otp Ensembl
worm
WORMBASE
Publications
First: Brachyury proteins regulate target genes through modular binding sites in a cooperative fashion. [Genes Dev 2002]
Most recent: Patterns of hypothalamic regionalization in amphibians and reptiles: common traits revealed by a genoarchitectonic approach. [Front Neuroanat 2015]
View All Papers 1 paper(s) referencing morpholinos
Functional Ontologies
GO: Molecular: DNA binding   transcription factor activity   PANTHER
      Biological: multicellular organismal development   regulation of transcription, DNA-dependent   PANTHER
      Cellular Component: nucleus   PANTHER
EC:
KOG: [K] Transcription factor PTX1, contains HOX domain
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones
GE Dharmacon GE Dharmacon GE Dharmacon
Antibody Otp Ab1
Affymetrix 1.0 StrJgi.5459.1.S1_at [+]
Affymetrix 2.0

Symbol legend[+]

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