sp5l Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (3)

Nucleotides (688)

Interactants (38)

XB-GENEPAGE-1000646

Gene Symbol: sp5l [provisional] Gene Name: Sp5 transcription factor-like [provisional] Synonyms: xspr-2, spr2, spr-2 Add Xenopus synonyms Gene Function: zinc finger, C2H2 type Interactants: sp1(2) , sp5(2) , t(2) , baz2b(1) , bix4(1) , cryba4(1) , crybb1(1) View All

XB-GENE-1000647

XB-GENE-6485591

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001113917\|Xenopus (Silurana) tropicalis GLI family zinc finger 1, gene 2 (gli1.2), mRNA GATCTTGTAAAGCTGCTGCTTCCTTCCAGCGGGACAAACCTCATGGCTTCTCTGGTTCTGCAAAGAGACAACACACTGCAGGCTTATTTACAGGACAGAACACCTAGTTCTTCACCAGAAGGAGGACTTCTGTCATCGTTGGCCCTATTTCCATCAACCTGTGTTCCTGTTATTACAGCCAAGCCCGCACCCCGGGAGTATACACAGTCTGCATACGATCCTGTTGCTCCAACTGCAGGAATGTTTCAGTTATGGAGCAATGATGTTCCGGCCAACTCAGGGATAGGCTCCCATGCTGTGACATTTGGTGTCCCTAAAGTGCAGTATCCTGGCCACATGCAAACTATTGCCTCTCATGAGCTCCCATTAACCCCCCCAGCGGATCCTACTGCTTATTCATTTGATTTGTCTCCAGTCAAAGTACTGGCTCCTCAAGTGCAGAGCAATGCTGCCTACCATTTCCAAGACCCAAGTGCAGTGGCTCAAGACTTCTCAGGCTTTATGCAAGGTTCAACCACTTTGACCCAAAGACACTTGAGTTCAACACACATTGATGAACAGACATGGTGGAGCCTGCAGCAGACAAGTCCAAACAATTTTCCCTCATTTCATTTAGCCAATCCATTAGTTGTTGGGTCACAGCCCCAGTTTGCAGCACTTCTACAGAGCTCCTCCAAAACACTACTAAACTCTACACGTCGCTGTCGGAGGTGTAAGTGCCCAAACTGCCAAGCATCTCCAAGCAACGAGGAACCAGGCAAAAAGAAGCTCCACATCTGCCATCTTCCAGGCTGTGGCAAAGTGTATGGAAAAACTTCCCATTTAAAGGCCCACTTGCGTTGGCATGCTGGTGAGAGGCCTTTTATCTGCAACTGGATGTTATGTGGGAAAAGTTTCACCCGCTCTGATGAACTGCAGAGGCACCTTAGGACTCATACTGGTGAGAAACGCTTTGGCTGCCAGGAGTGCGGCAAGAGGTTTATGAGAAGTGACCACCTTTCCAAACATACCAAAACCCACCAGAACAAAAAGATGAAGTGTGCAGGGTCACCCCTGGAAAACATTAAAAAGGAATGAGAAAAAAAAAATTAAAATTGCACATTTTACCCAGCAAAAGACTCAACCTATGAATGATTAGACTTTAAATAAGGAACCCAAATCTTTTGTATATAGCAATGTATCAAGGCATCACTCATGATGGAATGGTTGTGAATTTCTCTTAGGTTTATCTCCATGTCCAGAGCCAAATGTGATGCATTTAAAAATGGACATGCCTTTGGGTATTTATAGACATTTTGAAATTGGAAAATGCCAAGCTTTTTCTAATTTAAACCCTGTATGATTCAAATGAGCGTGTGTTGTATATAAGCGAGTATCTGTGTGGGAATTTTGGTGATACAACCTCCCTGTTATGGTATCACACATCAGTCACTGGAGTCAATATTTATTCATTTTATTTGGGATTAATCATTTTATGAGACCTCCTATTTATTGGGGCATAGGTGCCCAACCTGCCGGTGGGGCGAGATACTGGCAGCTGTAGGGCAGCAGGTTGTGCATCTCTATATTGGATAAAAACAAAGTATTTTGGAGAGCTGCTACTGATTGTGAGTGTGTGTATATACTGCCAAGGTTATCTAAATATAATAAAATACTTGTCTTCTTATTCACTCCATTCATGCAAATGTGATTTAGTCGTTAAACAGTTATTTCAACAAACTGCAAGAAAAATAAATGGAATTTAATGATTCTTTGTAAAAAAAAAAAAAAA	Refseq >NM_001088717\|Xenopus laevis GLI family zinc finger 1, gene 2 (gli1.2), mRNA CGGACTAATCGCATCTTCTGAGTGGTGTCGCAGCTACTCATTTTCTCCAGACTGGATATGATCTTGTAAAGCTGCTGCTGCTGCTTCCCTCCAGCGGGACAAACCTCATGGCTTCTCTGGTTCTGCAAAGACAACACACTACAAGCTTATTTACAGGACAGAACACCTAGTTCTTCACCAGACGGAGGACCCCTGACCTCTTTGGCCCTGTTTCCATCAACCTGTGGTCCTGTTATTACAGCAAGACCCACTCCCCGGGAGTATACACAGTCTGCATACGATCCAACTTCAGGAATGTTTCAGCTATGGAGCAATGATGTTCCTGCCAACTCAGGGATCGGTTCCCATGCTGTGACATTTGGTGTCCCCAAAGTGCAGTATCCTGGCCACATGCAAACTGTTGCCTCTCATGAGCTCCCATTAACCCCACCAGCGGATCCTACTGCTTATTCATTTGATTTGTCTCCAGTCAAAGTATTGGCTCCACAAGTGCAAAGCAATGCTGCCTACCATTTCCAAGACCCAAGTGCAGTGGCTCAAGACTTCTCAAGCTTTATGCAAGGTTCAGCCACTTTGACCCAAAGACACTTGAGTTCAACGCACATTGATGAACAGACATGGTGGAGCCTGCAGCAGACAAGTCCAAACAATTTTCCCTCATTTCATTTAGCAAACCCATTGGTTGTTGGGTCACAGCCCCAGTTTGCAGCACTTCTACAGAGCTCCTCCAAAACACTCCTAAACACAACACGGCGCTGCCGGAGGTGTAAGTGCCCAAACTGCCAAGCATCTCCAGGCAATGAGGAACCGGGCAAAAAGAAGCTCCATATCTGCCATCTTCCAGGCTGTGGCAAAGTGTATGGAAAAACTTCCCATTTAAAGGCCCACTTACGTTGGCACGCTGGTGAGAGGCCATTCATCTGCAACTGGATGTTATGTGGGAAGAGTTTCACCAGATCTGATGAACTGCAGAGGCACCTTAGGACTCATACTGGTGAGAAACGCTTTGGCTGCCAGGAGTGTGGCAAGAGGTTTATGAGAAGTGACCACCTTTCCAAACATACCAAAACCCACCAGAACAAAAAGATGAAGTGTGCAGGGTCTCCCCTGGAAAATATTAAAAAGGAGTAACAGAAACTTGCGCATTTTATTCAACAAAAGACTCAGCCTATGAATGTTTGAACATTAAATAGTGACCCCGAATCTGTTGTATATAAAAATGTCCTTAGGTGTCACTCATGATGCAAAATTTTCTCCTAGGTTTGTCTCCATCCCCCAAAAAAAAGCCACATGTGATACATTTAAAAGGGACACACCTTTGGGTATTTATAGACATTTTATAATTGGAATATGCCGAGCTTTTCTAATTTAAACCCTTTGTTTGTTTAAAGTGAATGTGTGTTATATATAAGTATTAGTGGGAATACTGGTGATACTGCTGCCTCCCTGTCGTGGTATCGCACATCAGTCACTGGAGTCAATATTTATTCCTTTTATTTGGGACTGAATGCCTCTATTAGACATCTATTTATTGGGTGAGAGGTGCCCAACCTGTCAAGGGGGATTCTGGGAGTCATAGGGCAGCAGGTTGCGCATCTCTGAACTGGATAAAAGCTGCTACTGATTGTGAGTGTGTGTATATATACTGCTTTGTTTATCTAAATAAAATACTTGACTTCTTATTCATTCCATTCATGCAAATGTGTTGTACCTACCGTCCTTTCAACAAACTGCAAAAAAAATAAAAGGAATTTAATGATCCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001107389\|GLI family zinc finger 1, gene 2 [Xenopus (Silurana) tropicalis] MFQLWSNDVPANSGIGSHAVTFGVPKVQYPGHMQTIASHELPLTPPADPTAYSFDLSPVKVLAPQVQSNAAYHFQDPSAVAQDFSGFMQGSTTLTQRHLSSTHIDEQTWWSLQQTSPNNFPSFHLANPLVVGSQPQFAALLQSSSKTLLNSTRRCRRCKCPNCQASPSNEEPGKKKLHICHLPGCGKVYGKTSHLKAHLRWHAGERPFICNWMLCGKSFTRSDELQRHLRTHTGEKRFGCQECGKRFMRSDHLSKHTKTHQNKKMKCAGSPLENIKKE	Refseq >NP_001082186\|GLI family zinc finger 1, gene 2 [Xenopus laevis] MFQLWSNDVPANSGIGSHAVTFGVPKVQYPGHMQTVASHELPLTPPADPTAYSFDLSPVKVLAPQVQSNAAYHFQDPSAVAQDFSSFMQGSATLTQRHLSSTHIDEQTWWSLQQTSPNNFPSFHLANPLVVGSQPQFAALLQSSSKTLLNTTRRCRRCKCPNCQASPGNEEPGKKKLHICHLPGCGKVYGKTSHLKAHLRWHAGERPFICNWMLCGKSFTRSDELQRHLRTHTGEKRFGCQECGKRFMRSDHLSKHTKTHQNKKMKCAGSPLENIKKE

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.43187 [+] Str.57321	Xl.2755
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		13 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human
mouse
zebrafish		ZFIN	sp5l	5 Lines(s)

Publications
First:		XSPR-1 and XSPR-2, novel Sp1 related zinc finger containing genes, are dynamically expressed during Xenopus embryogenesis. [Mech Dev 2002]
Most recent:		Microarray-based identification of Pitx3 targets during Xenopus embryogenesis. [Dev Dyn 2012]
		View All Papers 2 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		nucleic acid binding zinc ion binding
Biological:
Cellular Component:		nucleus
EC:
KOG:		[R] FOG: Zn-finger

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.6069.1.S2_at [+] Str.6069.1.S1_at	Xl.2755.1.S1_at [+] Xl.2755.1.S1_a_at Xl.2755.2.A1_at
Affymetrix 2.0			Xl2.2755.1.S1_at [+] Xl2.2755.1.S1_a_at Xl2.2755.2.S1_at

Symbol legend[+]