usp9x Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (4)

Nucleotides (150)

Interactants (12)

XB-GENEPAGE-1010833

Gene Symbol: usp9x Gene Name: ubiquitin specific peptidase 9, X-linked Synonyms: faf, fam, dffrx Add Xenopus synonyms Gene Function: ubiquitin carboxyl-terminal hydrolase Interactants: smad2(2) , kcnq1(1) , mapk14(1) , mapk8(1) , otx2(1) , smad1(1) , smad4.1(1) View All

XB-GENE-1010834

XB-GENE-6485825

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene
mRNA		Refseq >NM_001130249\|Xenopus (Silurana) tropicalis ubiquitin specific peptidase 9, X-linked (usp9x), mRNA GAGACATGTAGGCCCTGCCTGCAATTCTAGGCCTCTGCCCAATTTATTTAAATACCTTCGGTACCTCACCTTACACGAATAACCTAACAGTGCTTCTTTCAAATACTCGCGGCTCCCCTCTCTCCCACCTATTCAGTTTGTCTCAATAAAGCCAACATGCCCCTAAAATAAAGACGGAAGCTGCCGGAAATGTTATGCAATGGTCTCTGCAAAAAACTTTAGGCTTGTGGTGGAGCTTCGTAAGACAAACTTATGCCGGCTCATCATTAAGAGGACTATAATTTCTTTACTTGCTACAGTTACATAAACAGACAAAATTGCAAAGATCTGCCCTGTGTCGAGTATGACAGCCACGACCCGTGGCTCTCCCGTAGGTGGGAATGAAAGCCAGGGCCAGGCACCTGATGGACAGTCTCAACCTCCACTTCAGCAGAATCAGACTTCTTCACCTGATTCTTCCAATGAAAATTCCCCAGTCAGCCCTCCAGGTGAGCAGGGGCAGGATGGGGAAGCTCCACCTCAGCTTGAAGATGAGGAGCCTGCTTTTCCTCATACTGACCTAGCCAAGTTAGATGACATGATCAACAGACCTCGCTGGGTTGTACCAGTTTTGCCTAAGGGTGAATTAGAAGTTCTTCTAGAAGCTGCTATTGATCTTAGTAAAAAAGGCCTTGATGTGAAAAGTGAAGCATGTCAACGATTCTTTCGAGATGGGCTAACAATATCCTTTACTAAAATTCTTACTGATGAGGCAGTAAGTGGCTGGAAGTTTGAAATTCATAGGTGTATCATTAACAACACTCATCGCCTTGTTGAACTGTGTGTGGCAAAGCTTTCCCAAGATTGGTTTCCTCTTCTTGAACTTCTTGCTATGGCCTTAAATCCTCATTGTAAATTCCATATCTACAATGGTACACGTCCATCAGAGACAGTCCCTGCTGGAGTACAGTTGGCAGAAGATGAGCTTTTTGCCCGTCCTCCTGATCCACGTTCACCAAAGGTTTCACTTTTTTTTTTCACAGTTTGGCTAACTGAATTGCTGCCATTTCAAATGTGCATGATAAAAGCACAGCCATTTCTTGACATATGGAATGATAAATCAGAATGTATAGTTATTGTACAAACATTTATATGTGTAAATGGTAATATAGTACTTTGCTACCTGTACTAATTGTTTTGGAGTACAGAAAAGTAACAATAAATCGAAAATGGCATCAGGACTAAATAATACACTTCAGTAAGAAAATAAAATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001123721\|ubiquitin specific peptidase 9, X-linked [Xenopus (Silurana) tropicalis] MTATTRGSPVGGNESQGQAPDGQSQPPLQQNQTSSPDSSNENSPVSPPGEQGQDGEAPPQLEDEEPAFPHTDLAKLDDMINRPRWVVPVLPKGELEVLLEAAIDLSKKGLDVKSEACQRFFRDGLTISFTKILTDEAVSGWKFEIHRCIINNTHRLVELCVAKLSQDWFPLLELLAMALNPHCKFHIYNGTRPSETVPAGVQLAEDELFARPPDPRSPKVSLFFFTVWLTELLPFQMCMIKAQPFLDIWNDKSECIVIVQTFICVNGNIVLCYLY

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.78913 [+] Str.19925 Str.32636 Str.83924	Xl.4490 [+] Xl.72091
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		0 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	USP9X
mouse		MGI	Usp9x	All(6) Gene Trapped(3)
zebrafish

Publications
First:		Synthesis of biologically active fibroblast-activating factor (FAF) by xenopus oocytes injected with T lymphocyte mRNA. [Cell Immunol 1987]
Most recent:		Indirubin derivatives modulate TGFβ/BMP signaling at different levels and trigger ubiquitin-mediated depletion of nonactivated R-Smads. [Chem Biol 2012]
		View All Papers 1 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		cysteine-type endopeptidase activity ubiquitin thiolesterase activity
Biological:		ubiquitin-dependent protein catabolic process
Cellular Component:
EC:		ubiquitin thiolesterase
KOG:		[O] Ubiquitin carboxyl-terminal hydrolase (alt_id KOG:1866)

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.32636.1.A1_at [+] Str.19925.1.S1_s_at Str.19925.1.S1_at	Xl.4490.1.A1_at
Affymetrix 2.0			Xl2.31480.1.S1_at [+] Xl2.52551.2.S1_at Xl2.4490.1.A1_at Xl2.4490.1.A1_s_at Xl2.52551.1.S1_at Xl2.4490.2.S1_at

Symbol legend[+]