sox9 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (74)

Nucleotides (157)

Interactants (267)

XB-GENEPAGE-1034768

Gene Symbol: sox9 Gene Name: SRY (sex determining region Y)-box 9 Synonyms: cmd1, sox-9, sra1, cmpd1 Add Xenopus synonyms Gene Function: HMG-box transcription factor Interactants: ss18l1(47) , snai2(33) , sox10(21) , sox2(17) , twist1(15) , foxd3(14) , bmp4(13) View All	1/4

XB-GENE-1034769

XB-GENE-6253910

XB-GENE-1034775

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001016853\|Xenopus (Silurana) tropicalis SRY (sex determining region Y)-box 9 (sox9), mRNA CTGTGTGCGGGCAGAGGCAGGAGAGGGGCTTTAGCTACAGCCAATATTGCCAAAAGCCATAGCAATTCTGCATTGGGGGTGCTGACAAGTGAGCAGAGGCTGAGCCCCGTGCATGTTTGAAAGGCCTTGGAGGGCCACTCTCCCCATTGCTTTGGGTGCCTTTGCTGAAGAGCCACTTCCATTGTTCCTGTGAGAGACTGGGGTGCGGGAAGACGCGGCTCTGCCCAGACAGTGCCAGCCGCTCAACTCTCTTCGCCAACTTTCTCTCCATTCTCTTCGCACCGTTTTGCGCATGAATCTCTTGGATCCCTTCATGAAGATGACAGAAGAGCAAGATAAGTGCATGTCCGGGGCCCCCAGCCCAACAATGTCCGAGGACTCGGCTGGCTCCCCATGCCCCTCCGGCTCTGGCTCCGACACGGAGAACACCAGACCCCAAGAGAACACTTTCCCCAAAGGGGACCCGGAGCTGAAGAAGGAGACAGAGGACGAAAAGTTTCCTGTGTGCATCAGAGAGGCGGTCAGCCAGGTGCTGAAGGGATATGACTGGACCCTGGTACCGATGCCAGTCAGAGTTAATGGATCCAGCAAGAGCAAGCCTCATGTCAAGAGACCCATGAACGCCTTCATGGTGTGGGCACAGGCTGCAAGGAGGAAGCTGGCCGACCAATACCCCCATCTGCACAATGCAGAACTCAGCAAGACTCTGGGCAAGTTATGGAGACTTCTGAATGAGGGCGAGAAACGCCCTTTCGTGGAGGAAGCAGAGAGGCTGCGAATCCAACATAAGAAGGATCATCCAGACTACAAGTACCAGCCACGGCGCAGAAAGTCCGTAAAGAATGGGCAGTCAGAACAAGAGGACGGCGCTGAGCAAACCCACATCTCCCCTAATGCCATTTTTAAGGCCCTGCAGGCTGATTCCCCACATTCTGCCTCCAGCATGAGCGAAGTCCACTCTCCTGGAGAACATTCAGGTCAGTCCCAAGGCCCACCAACTCCTCCAACTACCCCCAAGACAGACGTCCAGCCTGGAAAGCCAGACCTGAAGAGGGAGGGCAGGCCACTGCAGGAGAGCGGTAGGCAGCCACCTCACATCGATTTCCGAGATGTAGATATTGGTGAACTGAGCAGTGAGGTCATCTCTACCATCGAAACCTTTGATGTCAATGAATTTGACCAATACCTGCCACCCAATGGCCACCCAGGTGTTGGCTCCACACAGGCCCCATACACAGGCAGTTATGGCATCAACAGCACCCCCAGCGCTACTCCGGGTGCTGGCCCTGCCTGGATGTCTAAACAACAACAGCAGCAGCAGCAACAACCACAGCCTCCCCAACACTCACTGTCAACCATAAACAGCGAGCAAAGCCAGTCCCAGCAAAGGACACACATCAAGACTGAACAACTGAGCCCTAGCCATTACAGTGACCAGCAGCAACAGCACTCCCCCCAGCAGCTGAACTACAGCTCCTTCAACCTGCAGCATTACAGCTCTTCCTACCCAACCATTACCCGTGCCCAGTATGACTACACAGAGCACCAAGGCTCCAACTCTTATTACAGTCACGCAAGCGGTCAGAATTCTGGTCTCTACTCCAACTTTAGCTACATGAATCCAAGCCAGCGCCCCATGTACACGCCTATTGCAGACACGACGGGAGTTCCATCCATCCCCCAGACACACAGCCCACAACACTGGGAGCAGCCTGTCTATACACAGCTCACCAGGCCCTAGATATGTGAATAGGACAATGACTTTTTATAAAGACATGAAATCCCCATTTACTGGGAAGCAAGTGGCGCCCTCTGCTGGTTACCAGCAATAACTGCTGTAACTCTCCAACAAGAACTTGCAACAAAGAGAGCAAGCTCAGTGACAGTCATAAGGGGTTTAACAAAAGCAGTTGCTTGGCTGCTCAGGTGACTTTATCATTAAGGCATTTTTAGCCACATTTGGGGAAAATTGCTAAAGCAGAATGTCCTCTGTGAGGACTATTGTCTAGCTCTGTCATTTAGTATGTACTGTGTATGTTTCATTGCCTTTACGGGGGTTTTTACATTTATACTTTAGACAACTTTTTGTAAAAAAAAATGTTCTTAATTTCTTCCCTCCGACCGCTGAACTAGTAGAACTCTCCAGCTTTTCTGCAATTTCATGTATTTTTGTAATTCAAATCGAAGAACGTTTATTTTCAAGAGTAGAATTGAATCTGGCCTTATACTGTGTTAAGTAATCCTGACAAGCTTCTAAGAAGCAACTAGAGGATCCGAAAGAGCATCAAGTAGGAGATTCGCCATGGTACATCATGAATGTAGGAAATATTTTTCCATATAGATATATACCCAAGTGCCAACAACCAAGTTGCCTAATAAACAAGTGCCCTTTTTTACCTTCACTCATATCCAGCAGTTAATATTAATTGCCAGTTTTGCCTTAGACAAAATCACCTGCAGATTTTTTTTTTTCAATTCCTAAATTATTTATTTTATATAAAAGCTAAAATGAAAAAAAATAAAAAAAAAAAAAAAAAA	Refseq >NM_001090807\|Xenopus laevis SRY (sex determining region Y)-box 9 (sox9-a), mRNA GCAGTGTGTGTGAGCGGAGAGGGAGGAGAGGCTATCTCTGTACCCAACTAATTGCGCACTGGGGTGCAAGGGCTGAGCACTGTGCATAACTGAAGGGGCTGGCGTGTCAGTCTCCCCTTTGATTTTGGGTGCCTTTGCTGAAGAGCAGATTTGGTCATTTTCATTGAGACTGAGGTGCGGGAAGACGCAGACACTGCCGAACTCTCTTCTCCAACTTTCTTACCTTTCCCCATTTTTGCGCATGAATCTCTTGGATCCCTTCATGAAGATGACAGAAGAGCAAGATAAGTGCATGTCCGGGGCTCCCAGCCCAACAATGTCCGACGACTCGGCAGGTTCCCCATGTCCCTCTGGCTCCGGCTCCGACACGGAGAACACCAGACCCCAAGAAAACACTTTCCCCAAGGGGGACCAGGAGCTGAAGAAGGAGACGGAGGATGAGAAGTTCCCCGTGTGCATCAGAGAAGCGGTCAGCCAGGTGTTGAAGGGATATGATTGGACCCTGGTACCGATGCCAGTCAGAGTTAATGGATCCAGCAAGAACAAGCCCCATGTCAAGAGACCAATGAACGCCTTCATGGTCTGGGCACAGGCTGCAAGGAGGAAGCTGGCTGATCAGTACCCCCACCTGCACAATGCAGAACTCAGCAAGACGCTGGGAAAGTTATGGAGACTTCTGAATGAGGGTGAGAAACGCCCTTTCGTGGAGGAAGCAGAGAGGCTGAGGGTCCAACACAAGAAGGATCATCCCGACTACAAGTATCAGCCACGGCGCAGAAAGTCCGTTAAGAATGGGCAGACAGAACAAGAGGATGGTGCTGAGCAAACCCACATCTCCCCTAATGCAATTTTCAAGGCCCTACAGGCTGACTCCCCGCATTCCTCTTCCAGCATGAGCGAAGTCCACTCTCCTGGAGAACATTCAGGTCAATCCCAAGGCCCCCCAACTCCTCCAACTACTCCCAAGACAGATATCCAGCCTGGAAAGCCAGACCTAAAGAGGGAGGGCAGGCCACTGCAAGAGAATGGTAGGCAGCCACCTCGCATTGATTTCCGAGATGTGGACATTGGTGAGCTGAGCAGTGAGGTCATCTCCACCATTGAAATCTTTGATGTCAATGAATTTGACCAATACCTGCCGCCCAATGGCCACCCAGGGGTTGGCTCCACTCAGGCCTCGTACACAGGCAGTTATGGCATCAGCAGCACCCCTAGTGCAACCACAGGTGCTGGCCCTGCCTGTATGTCTAAACAACAGCAACAGCAGCCTCAACAACATTCACTGTCAACCCTAAACAGCGAGCAAAGCCAGTCCCAGCAAAGGACACACATCAAGACCGAGCAACTGAGTCCGAGTCATTACAGTGACCAACAGCAACAGCATTCCCCCCAGCAGCTGAACTACAGCTCCTTCAACCTGCAGCATTACAGCTCTTCATACCCAACTATCACCCGTGCACAGTATGACTACACCGAGCACCAGGGTTCTAGTACCTATTACAGTCATGCAAGTGGCCAGAATTCTGGTCTCTACTCCACCTTTAGCTACATGAATCCAAGCCAACGCCCCTTGTACACCCCTATTGCAGACACAACAGGAGTTCCATCAATCCCCCAGACACACAGCCCACAACACTGGGAGCAGCCCGTGTACACACAGCTCACAAGACCCTAGATATGTGAGTAGAACAATGACTTTCTATAAAGACGTGAAATCCCAATCCACTGGGAAGCAAGTTGCACCCTCTGCTGGTCATCAGCAATAACTGTTGTAACTTTCCAACAAGAACTTGCAACACAGAGGGAGCAAACTGAGTGACACGGGGTTTAGCAAAAGCAGTTGATTGACTGCTCAGGTGACTCTTATCATTAAGGTATTTTTAGCCACATTTGGGGAAAACTGCTAAAGCAGAATGTCCTCTGTGAGGACTATTGTCTAGCTCTGTCATTTAGTATGTACTGTGTATGTTCCATTGCCTTTTACAGGGGTTTTTACATTTATATTTTAGACAACTTTTTGTATGAAAAAAAAAATTCTTAATTTTTTCCCTTCGAACGCTGAACAAGTAGAATTCTCCAGCTTTTCTTGCGATTTCAAGTTTTTTGTGTAATTCAAATAGAACATTTATTTTGAAGAACTGAATCTGGCCTTATACTGTGTTATCCAGACAAGCTTCTAAGAAGCAACTAGAAGGATCCGAAAGAGCATCAAGTAGGAGATTCGCCAATGGTACATTACGAATGTAGGAAATATTTTTCCATATAGATATATACCCAAGTGCCAACAACCAAGTTGCCTAAAAACAAGTGCCCTTTTTTACCACCCATATCCAGCAGTTACAACTTGACAATTTTGCCTTAGATAAAATCACCTGCAGATTTTTACTCAAGATTTTTTTAAATTCCTAAATTATTTATTTTGTATAAAAGCTAACATGTAAAAAAAATGCTTATTGATATCCCTGCTCCTTCCCATGACTTAAATATTTTAGCATGTTCTTCCAAACTCGGAAACTGCAACATTTTATTTTTTTGTTAAATTATGGATTATGCCGTTTCTCCTTTCTGTTATATTCCGTTCTAAATTTCTTATTGCAAGCCCTGTTTAAAAAAATAGAGTAGAAAAAGCTGCATTTTTTTTACACATGAAAACAATCTAATAGCATTATGAATCATTTTTGAGCTGAGAAAAATATATTAATTTATACCGAAATCCTTACTTAAAATATATAGAAAAAAAACCACCTCGGTGCTAATTAGACAATACGGCGAGCAATAACTTGTCATATAAAGTGCAGTCTGATTAGTGAAGTTTTAACCCTTGCTTCAAAATTGGTATTATTTTTGTATATTTTTAGATCCAATGAAGCACTCCTTAATTATTGCTTTTGTTACAAAAAAAAGCAGGCCTTAAATATTTCTTTAACTTAAACAAAAAGGATATACGATGTTTGTTAGTCGCTGGATTTTTTGTAAATTGTATTGTGTAACTTTTTTTGACAGTTTCTATGTTTTGTGTCTTTTGTGAAACTTACCCTCTTGTGTATTATTTTGCAATAAATATACCATGT		Refseq >NM_001094473\|Xenopus laevis SRY (sex determining region Y)-box 9 (sox9-b), mRNA GCTGTGTGTGAGTAGAGAGGAAAGGAGGGCCCTTATACTTAACATTAGCAAAGCCATTAGAAATTCTGCACTGGGGTGCTGCTGACAAGTGAGCAAAGGCCGAGCACTGTGCATGACTGAAGGGGCTGGAGAGTCAGTCTCCCCATTGCTTTGGCTGAAGAGCTGACTTGGCCACTTCCATTGTTCTCGGTTAAGTTGCGCAAAGACGCGGCTCTGCGCAAACAGTGCCACCCGCAGCCGACGAACTCGCTTTTCCAACATTCTGCTCTCACCATTATTCGCATGAATCTCTTGGATCCCTTCATGAAGATGTCAGAAGAGCAAGATAAGTGCCTGTCCGGGGCTCCCAGCCCAACAATGTCCGAGGACTCAGCAGGGTCCCCGTGCCCATCCGGCTCTGGCTCCGACACGGAGAACACCAGACCCCAAGAAAACACTTTCCCCAAAGGGGACCAGGAGATGAAGAAGGAGACAGAGGACGAGAAGTTCCCCGTGTGCATCAGAGAAGCGGTCAGCCAGGTGCTGAAGGGATATGACTGGACCCTGGTACCGATGCCAGTCAGAGTTAATGGATCCAGCAAGAACAAGCCCCATGTCAAGAGACCCATGAATGCCTTCATGGTCTGGGCACAGGCTGCAAGGAGGAAGCTGGCAGACCAATATCCCCATCTGCACAATGCAGAACTCAGCAAGACGCTGGGGAAGTTATGGAGGCTTTTGAATGAAGGTGAGAAACGCCCTTTCGTGGAGGAAGCAGAGAGGCTGAGGGTCCAACACAAGAAGGATCATCCCGACTACAAGTATCAGCCACGGCGCAGAAAGTCTGTTAAGAACGGGCAGTCAGAACAAGATGATAGTGCTGAGCAGACCCACATCTCCCCTAATGCAATTTTCAAGGCCCTACAGGCTGACTCCCCACATTCTACTTCCAGCATGAGTGAAGTCCACTCTCCTGGAGAACATTCAGGTCAATCCCAAGGCCCACCGACTCCTCCAACCACCCCCAAGACAGATGTCCAGCCTGGAAAGCCAGACTTGAAGAGGGAGGGCAGGCCACTGCAGGAGAGCGGTAGGCAACCGCCTCACATTGATTTCCGTGATGTGGACATTGGTGAGCTGAGCAGTGAGGTCATCTCCACCATCGAAACCTTTGACGTCAATGAATTTGACCAGTACCTGCCACCCAATGGCCACCCAGGGGTCGGCTCCGCTCAGGCCCCGTACACAGGCAGTTATGGCATCAGCAGCACCCCTAGTGCCACTACAGGTGCTGGTTCTGCCTGGATGTCTAAACAGCAACAGCAGCCTCAGCAACACTCACTGTCAACCATAAACAGCGAGCAAAGCCAGTCCCAGCAAAGGACACACATCAAGACTGAGCAACTGAGCCCAAGTCATTACAGTGACCAGCAGCAACAGCACTCCCCCCAGCAACTGAACTACAGCTCCTTCAACCTACAGCATTACAGCTCTTCCTACCCAACCATCACCCGGGCACAGTATGACTACACAGAGCACCAGGGCTCCAACTCCTATTACACTCACGCAAGTGGTCAAAATTCTGGTCTCTACTCCAACTTTACCTACATGAATCCAAGCCAACGCCCCATGTACACCCCTATTGCAGACACAACGGGAGTTCCATCAATCCCCCAGACACACAGCCCACAGCACTGGGAGCAGCCTGTCTATACACAACTCACAAGACCCTAGATATGTGAGTAGAACAATGACTTTTTCTAAAGACATGAAATCCCCATCCACTGTGAAGAAAGTTGCGCCCTCTACTGGTCACCAGCAATAATTGCTGTAACTCTCCAACAAGAACTTGTGACACAGAGGGAGCAAGCTGAGTGACAGTCATAAGGGGTTTAGCAAAAGCAGTTGCTTGGCTGCTCAGGTGACTCTAGCCTTAAGGTATTTTTAGCCAAATTCGGGGAAAATTGCTAAAGCAGAATGTCCTCTGTGAGGACTATTGGTTAGCTCTGTCATTTAGTATGTACTGTGTATGTTCCATTGCCTTTTACAGGGGTTTTTACATTTATACTATAGACAACTTTTTGTAAAAAAAACAAACATTTTCTTAATCTCTTCCCTCCGAATGCTGAACTAGTAGAACTCTCCAGCTTTTCTTGCAATTTCAAGTATTTTTGTAATTCAAATAGAAGAACATTTATTTTCAAGAGAAGAACTGAATCTGGCCTTATACTGTGTTTAGTAATCCAGACAAGCTTCTAAGAAGCAACTAGAAGGATCCGAAAAAGTATCAAGTAGGAGATTTGCAAAGGTACATTATGAATGTAGGAAATGTTTTTCCATATAGATATATACCCAAGTGCCAACAATCAAGTTGCCTAAAAACAAGTGCCCTTTTATTACCTTAACGTATATCCAGCAGTTAAAACCTGCAAATCTTGCCTTAGACAAAATCATCTGCAAATATTTACTCCAGATTTTTTTAATTCCTAAATTATTTATTTTGTATAAAAGCTAATATGTAAAATAAAATGCTTAGTGAGAATCACTGCTCCCTCTCACGACTTAAATATTTTAGCATGCATTCCAATCTTGGAAACTGCAATTTTTTTTTTGTTAAATTATAAATTCTGCTGTTTTCTCCCTTCTGTTATATTCCGTTTTTTACTTATTGCCAAACGAATGCAAGTCCTGTTTATGAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001016853\|transcription factor Sox-9 [Xenopus (Silurana) tropicalis] MNLLDPFMKMTEEQDKCMSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGDPELKKETEDEKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKSKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRIQHKKDHPDYKYQPRRRKSVKNGQSEQEDGAEQTHISPNAIFKALQADSPHSASSMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKPDLKREGRPLQESGRQPPHIDFRDVDIGELSSEVISTIETFDVNEFDQYLPPNGHPGVGSTQAPYTGSYGINSTPSATPGAGPAWMSKQQQQQQQQPQPPQHSLSTINSEQSQSQQRTHIKTEQLSPSHYSDQQQQHSPQQLNYSSFNLQHYSSSYPTITRAQYDYTEHQGSNSYYSHASGQNSGLYSNFSYMNPSQRPMYTPIADTTGVPSIPQTHSPQHWEQPVYTQLTRP UniProtKB	Refseq >NP_001084276\|transcription factor Sox-9-A [Xenopus laevis] MNLLDPFMKMTEEQDKCMSGAPSPTMSDDSAGSPCPSGSGSDTENTRPQENTFPKGDQELKKETEDEKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQTEQEDGAEQTHISPNAIFKALQADSPHSSSSMSEVHSPGEHSGQSQGPPTPPTTPKTDIQPGKPDLKREGRPLQENGRQPPRIDFRDVDIGELSSEVISTIEIFDVNEFDQYLPPNGHPGVGSTQASYTGSYGISSTPSATTGAGPACMSKQQQQQPQQHSLSTLNSEQSQSQQRTHIKTEQLSPSHYSDQQQQHSPQQLNYSSFNLQHYSSSYPTITRAQYDYTEHQGSSTYYSHASGQNSGLYSTFSYMNPSQRPLYTPIADTTGVPSIPQTHSPQHWEQPVYTQLTRP UniProtKB		Refseq >NP_001087942\|transcription factor Sox-9-B [Xenopus laevis] MNLLDPFMKMSEEQDKCLSGAPSPTMSEDSAGSPCPSGSGSDTENTRPQENTFPKGDQEMKKETEDEKFPVCIREAVSQVLKGYDWTLVPMPVRVNGSSKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLNEGEKRPFVEEAERLRVQHKKDHPDYKYQPRRRKSVKNGQSEQDDSAEQTHISPNAIFKALQADSPHSTSSMSEVHSPGEHSGQSQGPPTPPTTPKTDVQPGKPDLKREGRPLQESGRQPPHIDFRDVDIGELSSEVISTIETFDVNEFDQYLPPNGHPGVGSAQAPYTGSYGISSTPSATTGAGSAWMSKQQQQPQQHSLSTINSEQSQSQQRTHIKTEQLSPSHYSDQQQQHSPQQLNYSSFNLQHYSSSYPTITRAQYDYTEHQGSNSYYTHASGQNSGLYSNFTYMNPSQRPMYTPIADTTGVPSIPQTHSPQHWEQPVYTQLTRP UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.15584	Xl.1690		Xl.28992
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		87 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SOX9	OMIM:114290
mouse		MGI	Sox9	All(14) Targeted, knock Out(3) Targeted, other(7)
zebrafish		ZFIN ZFIN	sox9b sox9a	16 Lines(s) 12 Lines(s)

Publications
First:		Transcription factors in disease. [Curr Opin Genet Dev 1996]
Most recent:		Mustn1 is essential for craniofacial chondrogenesis during Xenopus development. [Gene Expr Patterns 2013]
		View All Papers 30 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		DNA binding
Biological:		regulation of transcription, DNA-dependent
Cellular Component:
EC:
KOG:		[K] HMG-box transcription factor

Reagents		tropicalis	laevis a		laevis b
Clones			EXRC - 1 clone(s)
		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.15584.1.S1_at [+] Str.15584.1.S2_at	Xl.1690.1.S1_at
Affymetrix 2.0			Xl2.1690.1.S1_at		Xl2.28992.1.S1_at

Symbol legend[+]