Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Gene Literature (166) GO Terms (22) Nucleotides (160) Proteins (41) Interactants (1405) Wiki
XB-GENEPAGE-1034768
Gene Symbol: sox9

Gene Name: SRY-box 9

Synonyms: cmd1 , sox-9 , sra1 , cmpd1 , sox9-b , sox9-a ( Add synonyms , Nomenclature history )

Gene Function: HMG-box transcription factor

Protein Function :
Transcription activator. Acts early in neural crest formation, functioning redundantly with the other group E Sox factors sox8 and sox10 to induce neural crest progenitors. Induces sox10 expression dow...[+]


Interactants: Loading ...
Disease Ontology: campomelic dysplasia

OMIM Diseases: CAMPOMELIC DYSPLASIA [+]

1/6
 
Xenbase Gene ID XB-GENE-1034769 XB-GENE-1034775 XB-GENE-6253910
Gene Symbol sox9 sox9.L sox9.S
Chromosome Chr10 Scaffold30 chr9_10S
Molecules tropicalis laevis.L laevis.S
Genomic Sequence Version 9.1 Version 9.1 Version 9.1
CDS Gene model
Entrez Gene: 549607
Entrez Gene: 494585
Entrez Gene: 399405
mRNA RefSeq RefSeq RefSeq
Protein RefSeq Swiss-Prot TrEMBL RefSeq TrEMBL Swiss-Prot RefSeq Swiss-Prot
Genomic tropicalis laevis.L laevis.S
Genome Browser
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics tropicalis laevis.L laevis.S
Embryonic Protein Expression Stage profile:
Data Mining tropicalis laevis.L laevis.S
XenMine sox9 sox9.L sox9.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards SOX9 OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI, AGR Sox9 MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN, AGR ZFIN, AGR sox9b sox9a ZFIN Ensembl
chicken
GEISHA SOX9 Ensembl
fruit fly
worm
WORMBASE
Publications
First Transcription factors in disease., Curr Opin Genet Dev 1996  
Most Recent Single Amino Acid Change Underlies Distinct Roles of H2A.Z Subtypes in Human Syndrome., Cell 2019                                  
All View All Papers 51 paper(s) referencing morpholinos 10 paper(s) referencing OMIMs 14 paper(s) referencing Disease Ontology
Functional Ontologies tropicalis laevis.L laevis.S
GO 22 terms 11 terms 11 terms
PANTHER sox9
KEGG Pathways K18435 K18435 K18435
KOG [K] HMG-box transcription factor
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones
Horizon Horizon Horizon
Antibody Sox9 Ab1 Sox9 Ab1 Sox9 Ab1
Morpholino sox9 MO1 sox9 MO1 sox9 MO1
ORF sox9.L ORF1
Affymetrix 1.0 Str.15584.1.S1_at [+] Xl.1690.1.S1_at
Affymetrix 2.0 Xl2.28992.1.S1_at Xl2.1690.1.S1_at

Symbol legend: - Blast this sequence    - View this sequence       - Literature or expression images  
Xenbase: The Xenopus laevis and X. tropicalis resource.
Version: 4.12.3


Major funding for Xenbase is provided by grant P41 HD064556