Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Gene Literature (172) GO Terms (36) Nucleotides (178) Proteins (49) Interactants (1417) Wiki
Gene Symbol: sox9

Gene Name: SRY-box 9

Synonyms: cmd1 , sox-9 , sra1 , cmpd1 , sox9-b , sox9-a ( Add synonyms , Nomenclature history )

Gene Function: HMG-box transcription factor

Protein Function :
May be involved in chondrogenesis (cartilage development) during bone formation. Unlikely to play a role in sex determination but may function during testicular and ovarian differentiation. Transcripti...[+]

Interactants: Loading ...
Diseases:  Disease Ontology: campomelic dysplasia


External Disease Links: ClinVar, MalaCards, KEGG Disease, DECIPHER
Xenbase Gene ID XB-GENE-1034769 XB-GENE-1034775 XB-GENE-6253910
Gene Symbol sox9 sox9.L sox9.S
Chromosome Chr10 Scaffold30 chr9_10S
Molecules tropicalis laevis.L laevis.S
Genomic Sequence Version 9.1 Version 9.2 Version 9.2
CDS Gene model Gene model Gene model
Entrez Gene 549607
mRNA RefSeq RefSeq RefSeq
Protein RefSeq Swiss-Prot TrEMBL RefSeq TrEMBL Swiss-Prot RefSeq Swiss-Prot
Genomic tropicalis laevis.L laevis.S
Genome Browser
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics tropicalis laevis.L laevis.S
Embryonic Protein Expression Stage profile:
Data Mining tropicalis laevis.L laevis.S
XenMine sox9 sox9.L sox9.S
MOD Entrez Gene Genetic Phenotypes Gene Expression
OMIM:Gene, HGNC, GeneCards SOX9 OMIM Ensembl, Protein Atlas, Allen Brain Atlas
MGI, AGR Sox9 MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
ZFIN, AGR ZFIN, AGR sox9b sox9a ZFIN Ensembl
fruit fly
First Transcription factors in disease., Curr Opin Genet Dev 1996  
Most Recent Disrupted ER membrane protein complex-mediated topogenesis drives congenital neural crest defects., J Clin Invest 2020                                  
All View All Papers 51 paper(s) referencing morpholinos 10 paper(s) referencing OMIMs 16 paper(s) referencing Disease Ontology
Functional Ontologies tropicalis laevis.L laevis.S
GO 36 terms 11 terms 11 terms
KEGG Pathways K18435 K18435 K18435
KOG [K] HMG-box transcription factor
Reagents tropicalis laevis.L laevis.S
CRISPRscan Tracks sox9
Antibodies Sox9 Ab1 Sox9 Ab1 Sox9 Ab1
Morpholinos sox9 MO1 sox9 MO1 sox9 MO1
ORFs sox9.L ORF1
Clones Horizon Source BioScience Horizon Source BioScience Horizon Source BioScience

Symbol legend: - Blast this sequence    - View this sequence       - Literature or expression images  
Xenbase: The Xenopus laevis and X. tropicalis resource.
Version: 4.13.1
Major funding for Xenbase is provided by grant P41 HD064556