trim33 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (7)

Nucleotides (127)

Interactants (33)

XB-GENEPAGE-1216164

Gene Symbol: trim33 Gene Name: tripartite motif containing 33 Synonyms: ptc7, rfg7, tf1g, tif1g, tifgamma, tif1gamma, ectodermin, tif1-gamma Add Xenopus synonyms Gene Function: ubiquitin-protein ligase Interactants: smad4.2(5) , smad4.1(4) , tgfb1(3) , nodal(2) , a2m(1) , dand5(1) , dkk1(1) View All

XB-GENE-1216165

XB-GENE-1216172

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001079564\|Xenopus (Silurana) tropicalis tripartite motif containing 33 (trim33), mRNA GTCAGGTCGCCGTGGCCGTTAGAGCGAAGCAAGGGAAAGAGGGGCGGCGTGCTGTACGTGCGCTGGTGGCGTAGCGAAGCGGTCAGTTCAGGGGTTCAAAGAGGAGAAAACATGGCGGATAACAAAGGAGGAGGTGGCGGTGGGGGAGAGACCGAGGGGGACGCGAGCAGCAATAATAACAACAACAGCAATGGCGCCGGGCAGACCGGCAGTTCTGGTGACACAGAGAGTCAAACAGTAGAGGAGCCGGAGAGTGTTGAGAAGGCCCCAGCTACTGCGGTCCCTACAGATGCCCCGTCTGAGGAAAACCCTGCCCCGTCCTCTTCGTCAGTGGCCTCATCTTCTGCTGCTCCAGCACCAACATCATCATCTTCTCCTCTAGTGGTGAACTTACTGGATACGTGCGCTGTGTGTAAGCTGAGCCTGCAAAGCCGGGACTCTGAGCCAAAGCTCCTGCCATGTTTGCACTCGTTCTGTCGCCGCTGTCTGCCGGAGCCCGAGAGGCAGCTCAGTGTTCCCCTACCTGGTGGTACTAATGGAGACATCCAGCAAGTTGGTGTAATAAGGTGCCCAGTATGCAGACAAGAATGCAGGCAGATTGATCTAGTGGATAACTATTTTGTAAAAGACACTTCAGAAGTACCAAGCAGCACAGATGAAAAGTCTGAACAGGTTTGTACAAGTTGTGAAGATAATGCAAGTGCGGTTGGGTTTTGTGTGGAATGTGGAGAATGGCTCTGCAAGACATGCATAGAAGCCCATCAAAGGGTTAAATTCACAAAAGACCACATAATAACGAAGAAAGAAGATGTATCCTCAGAATCAGTGGGAGCTTCAGGTCAACGTCCAGTTTTTTGTCCGGTTCACAAACAAGAGCAACTCAAACTATTTTGCGAAACGTGTGATAGACTGACATGCAGAGACTGTCAGTTACTAGAGCACAAGGAACACAGGTATCAGTTTCTGGAAGAGGCTTTTCAAAACCAGAAAGGTGCTATTGAAAACTTACTTGCCAAGCTTCTAGAAAAGAAGAACTATGTACATTTTGCTGCTACTCAGGTTCAAAACAGGATAAAAGAAGTAAATGAAACCAATAAACGCGTGGAACAGGAAATTAAAGTGGCAATTTTCACTTTAATAAATGAAATTAATAAGAAGGGCAAATCTCTTCTGCAGCAGTTGGAGAGTGTTACAAAAGAACGGCAGATTAAACTTGTACAGCAGCAAAATGATATCACTGGTCTCTCACGGCAAATAAAGCATGTCATGACCTTCACTAACTGGGCTATTGCAAGTGGCAGCAGCACAGCCTTACTGTACAGCAAACGCTTGATCACTTTTCAGTTACGTCATATCTTAAAGGCACGTTGTGACCCTGTCCCAGCAGCCAATGGGGCAGTAAGATTTCATTGTGACCCAACTTTTTGGGCAAAGAATGTTGTAAATTTAGGTAACCTTGTAATCGAAAATAAGCCAACTGCTGGTTTTACTCCTAATGTCGTAGTTGGGCAAGTTCCCCAAGGAGTTAACCATGTAAACAAACCACCCGCACAAATTAATTTAGCTCAGCTCCGACTCCAGCATATGCAGCAGCAGGTGTATGCTCAAAAACAGCAGCAACTTCAAATGAGGATGGTCCAGCCACCTGTCCAGCATCAGAGACCACCTGCACCTCAAGTAATGCATCAACAGCCTCCAAGGTTAATAAGCATGCAGAATATGCCAAGGAATAATATGAACTGTGGCCCATTTCAAGCACATCAAATGAGAATGGCACAAAATGCAGCCCAGAATGCTTCCAGGATGCCTGGTATCCCTCGTCATAATGGACCCCAATACTCAATGATGCAGCCTCATCTCCAAAGACAACAGCATTCGAACCCAGGGCATGCTGGACCATTCCCAGTTGTTTCAGTACACAACAACACAATCAATCCAACTAGTCCTACAACCGCAACAATGGCAAATGCAAATCGTGGACCAACCAGCCCATCTGTTACATCTATAGAACTTATACCATCAGTAACAAACCCAGAAAATCTTCCCTCTCTTCCAGACATTCCACCAATTCAGCTGGAAGATGCAGGCTCTAGCACCTTAGACAATCTATTGAGTAGATATATTTCAATGGGACATCAGCTACCACAACCAACAAGCACTATGAATCCCTCCCCTGCTCCTTCTGCAATGTCTCCGGGATCTACAGATGCACTTGAAATGTGTTCCCACTTGCCATGTACACGGTGATGCTAAGAATCTGTACTGTTCCTGTTCTCAGGCTTGTCCAATTCACACACACCAGTGAGGCCTCCCAGTACATCAAGTACAGGCAGTAGAGGAAGCTGTGGTTCAAGTGGACGAACAATTGAAAGAAACTCTGCCTTTAAATCTGAATCTGTCAAGGTTAAACAAGAACCTGGAACAGAGGAGGATGTGTGTAGTTTCTCAGGACCAGTAAAGCAGGAAAAGGCTGAAGATGGCAGGAGGAGTGCATGCATGCTGAGCAGCCCAGAAAGCAGTCTGACACCTCCACTCACCACCAATGTGCACCTTGAAACTGATCTGGAGTCACTGGCCGCTTTGGAAAATCACGTGAAAACCGAACCAAACAGCACAAGCCAAAGCTGCAAACAGTCATCTCATGTTGGCCTTGTAAATGGGAAATCCCCTGTACGGAGTTCAATGCACCGGTCACCTAGAGGAAATGGTGGTGATGGTTCTAACAAAGATGATGACCCCAATGAGGATTGGTGTGCAGTGTGCCAAAATGGAGGAGACCTCTTATGTTGTGAAAAGTGCCCTAAAGTTTTTCACCTTACTTGTCATGTACCCACGCTGCTTAGTTTTCCCAGTGGTGAATGGATTTGTACGTTCTGCAGAGATCTGAATAAACCTGAAGTTGAGTATGACTGTGATAATTCTCAGCACAGTAAGAAAGGGAAAACTGTGCAAGGCTTAAGTCCTGTAGACCAAATGAAATGTGAGCGGCTTCTACTTTATCTCTACTGTCATGAACTGAGCATTGAATTTCAGGAGCCTGTGCCAGCATCGATACCAAATTACTACAAAATAATTAAGAAGCCAATGGATCTTTCTACTGTGAAAAAGAAGCTACAGAAGAAACATTCACAACACTATCAAACGCCAGAAGATTTTGTTGCAGATGTCAGGCTAATATTTAAGAACTGCGAAAGGTTCAATGAAATGATGAAAGTTGTTCAAGTTTATGCAGAAACACAAGAAATTAATCTACAGAATGACTCAGAAGTTGCCCAAGCAGGGAAGGCTGTTGCAATATATTTTGAGGACAAACTTCCTGAAATCTACCCGGACAGGACCTTCCAGCCGTTGCCAGAGTTTGAACCAGAGGATGATGATGGAGATGTAACAGAGGATTCAGATGACGATGATTTTGTTCAACCTCGTAGAAAACGACTGAAGTCAGACGAGAGACCGGTGCATATAAAGTGATAAGAGCACGGAACTCTAAAGATTTTGTGTAGAGACTAAACAAATTTAAAAAGAACTTATTTAAATGTTTCCGGAATATCATCACTCCTGCATCAGCCATCTTCATGAAGAATTTGGCAGCTTTTAGACAGTATTAGATCAACAAATATTTGTACAGATAAAGAGCAATCTTTCAAGAAAAGAATTGGGGAAATTTGTCACTTTTTTTTTTTTTTAGGACTGATGGACTCCTGACCTGGGGAGCAATTCTTGTGTTTTCTCAATTAGGACTTTGTGAATGTTAAAGACAGTCTTTGTTTTTGTTTTGTTTTTTTTCTCCCCCCCAGCAGTTCTTTGTACAGATGTATAAGTGAACTCGGTGATTGTGTTTCTTGTTGATCTTTCTTTGTTGAACATTGGACCATTACCTTCAGTTTACTGTAATATATTTCCTTTCCCTGCCAATGAACTGCTCTAAGCTTGATGGCAAAAATGGTACATTAAGTGTACTTTGAAATGGCTTCATCATTCTTCTTTACAGCGTTTTTTTTTAATTATTTTTGAGCTTTTACATTTCTTGATTGATTATCGGGATTGGATTGTCCTTCAAGACTTTGAAATATATTTATATATTTTGTGAAGGAATCGGTTTATCATGGTCAAAACTATAGTAACTTGCTTTGTAAATAGAAGGAAGCTTCTCTGTGTTCATATATTCATTATGCATTAATTTGGGCAACAGGTTGTCAACTTTTACTGTTGTCTTGCATCTGACATGAGGAAAAATAAATGAATATCTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001095608\|Xenopus laevis tripartite motif containing 33 (trim33), mRNA GCGGAGCAAGGGAAAGAGGGGCGGCGTGTTGTACGTGCGCTGCTGGCGTAGCGAAGCGGTCAGTTCAGGGGTTCAAAGAGGAGAAAACATGGCGGATAACAAAGGAGGAGGTGGCGGTGGGGGAGAGACCGAGGGGGACGCGAGCAGCAATAATAACAACAATAGTAATGGCGCCGGGGAGACCGGCAGTCCTGGTGAGACAGAGAGCCAAGCCGTGGAGGAGCCGGAGAGTGCTGAGAAGGCCCCCGTTGCGGCGGTCCCTACAGATACCCCGGCAGAGGAAAACCCTGCCCCGTCCTCCTCGTCAGTGGCCTCTTCTTCTGCTACTCCTGCATCATCTTCCTCGTCTCCTCTAGTGGTGAACTTACTGGATACGTGCGCTGTGTGTAAGCTCAGCCTGCAAAGCCGGGACACTGAGCCCAAGCTCCTGCCATGTTTGCACTCATTCTGTCGCCGCTGTCTGCCTGAGCCCGAGAGGCAGCTCAGTGTCCCTGGTGGAACTAATGGAGACATCCAGCAAGTTGGTGTAATAAGGTGCCTAGTGTGCAGACAAGAATGCAGGCAGATTGATCTAGTGGATAATTATTTTGTAAAAGACGCGTCGGAAGCACCAAACACTGATGAAAAGTCTGAACAGGTTTGCACAAGTTGTGAAGATAATGCAAGTGCAGTTGGGTTTTGTGTGGAATGTGGGGAATGGCTCTGCAAGACATGCATAGAAGCCCACCAAAGGGTTAAATTCACAAAAGACCACATCATAACAAATAAAGAAGATGTATCCTCCGAATCTGTGGGAGCTTCTGGTCAACGTCCAGTTTTTTGTCCGGTCCACAAACAAGAACAGCTCAAATTATTTTGTGAAACATGTGACCGACTAACATGCAGAGACTGTCAGTTACTAGAGCACAAGGAACACAGGTATCAGTTTCTCGAGGAGGCTTTTCAAAACCAGAAAGGTGCTATCGAAAACTTACTTGCCAAGCTTCTAGAAAAGAAGAACTATGTGCATTTTGCTGCTACTCAGGTTCAAAACAGAATAAAAGAAGTAAATGAAACCAATAAGCGAGTGGAACAGGAAATTAAAGTGGCAATTTTTACTTTAATAAATGAAATTAATAAGAAGGGTAAATCTCTTCTGCAGCAGTTGGAGAGTGTTACAAAGGAACGACAGATTAAACTTGTACAGCAGCAAAATGATATCACTGGTCTCTCACGGCAAATAAAGCATGTAATGACATTCACAAACTGGGCTATTGCGAGTGGCAGCAGCACCGCCTTACTGTACAGCAAACGCTTGATCACTTTCCAGTTACGTCATATCTTAAAGGCACGTTGTGACCCTGTCCCAGCAGCCAATGGGGCAATAAGATTTCATTGTGACCCAACTTTTTGGGCAAAGAATGTTGTAAATTTAGGTAACCTTGTTATTGAAAATAAGCCAACCACTGGTTTTACTCCTAATGTAGTGGTTGGGCAAGTTCCCCAAGGAGCGAACCATGTTAACAAACCACCTGCACAAATAAATTTAGCTCAGCTCCGACTCCAGCACATGCAACAGCAGGTGTATGCTCAAAAACAGCAGCAACTCCAAATGAGGATGGCCCAGCCACCTGGCCAGCACCAGAGACCATCTGCACCTCAAGTGATGCATCAGCAGCCTCCACGGTTAATAAGCATGCAGAGTATGCCGAGGAATAATATGAACTGTGGCCCATTTCAAGCACATCAAATGAGAATGGCACAAAATGCAGCCCAGAATGCTGCTAGGATGTCTGGTGTCCCTCGTCATAATGGAATGCAATACTCAATGATGCAGCCTCATCTCCAAAGACAACATTCCAACCCAGGGCATGCTGGCCCATTTCCAGTTGTTTCAGTACATAACAACACAATCAATCCAACTAGTCCTACAACAGCAACCATGGCAAATGCAAATCGGGGACCAACCAGCCCATCTGTTACATCTATAGAACTTATCCCATCAGTAACAAACCCAGAAAACCTTCCCTCTCTTCCAGACATCCCACCAATCCAACTGGAAGATGCAGGATCTAGCAATTTAGACAATCTATTGAGTAGATATATTTCATTAGGACATCAGCTACCACAACCAACAAGCAATATGAATCCCTCCCCTGCACCTTCTGCAATGTCTCCAGGATCTACAGGCTTGTCCAATTCACACACACCAGTGAGGCCTCCCAGTACGTCAAGTACAGGCAGTAGAGGAAGTTGTGGTTCAAGTAGTCGAACAGTTGAAAGAAATTCTTCCTTTAAATCTGACCCTGTCAAAGTTAAACAAGAACCTGGAACAGAAGAGGAAGTGTGCAGTTTCTCAGGACCAGTAAAGCAGGAGAAGGCTGAAGACGGCAGGAGGAGTGCATGCATGCTGAGCAGCCCAGAAAGCAGTCTGACACCTCCACTCACCACAAATGTGCACCTTGAAACTGATCTGGAGTCACTGGCTGCTTTGGAAAATAACGTGAAAACCGAACCAAACAACACAAGCCAAAGCTGCAGGCAGTCATCTCATGTTAGCCTTGTAAATGGGAAATCTGCAGTAAGAAATTCAATGCATCGACCGCCTAGGGGAGGTGGTGGTGGTGATGGCTCCAACAAAGATGATGACCCAAATGAAGACTGGTGTGCAGTGTGCCAAAATGGAGGAGACCTCTTATGTTGTGAAAAGTGCCCTAAAGTTTTTCACCTTACTTGTCATGTACCCACGCTGCTTAGTTTTCCAAGTGGTGAATGGATTTGTACATTCTGCAGAGATTTGAATAAACCTGAAGTTGAATATGATTGTGATAATTCACAGCACAGCAAGAAAGGGAAAACCGTGCAAGGCCTAAGTCCTGTAGACCAAATGAAATGTGAGCGGCTTCTACTTTATCTCTACTGCCACGAACTGAGCATTGAATTTCAGGAGCCTGTTCCAGCTACGATACCAAACTACTACAAAATAATTAAGAAGCCAATGGATCTTTCTACTGTGAAAAAGAAGCTACAGAAGAAACACTCACAGCACTATCAAACACCCGAAGATTTTGTTGCAGATGTCAGGCTAATATTTAAGAACTGTGAAAGGTTCAATGAAATGATGAAAGTTGTTCAAGCTTATGCAGACACACAAGAAATTAATCTACAGAACGACTCCGAAGTTGCCCAAGCAGGGAAGGCTGTTGTTTTATATTTTGAGGAAAAACTACCCGCAATCTACCCTGACAGGACCTTCCAACCATTGCCAGAGTTTGAAGCAGAGGATGATGACGGAGATGTAACAGACGATTCAGATGACGATGATTTTGTTCAGCCTCGTAGAAAACGACTGAAGTCAGAAGAGAGACCGGTGCATATAAAGTGATGAGCACGGAACTCTAAAGATTTTGTGTAGAGATTAAACAAAATTGACAATGAACTTATTTAAATGTTTCCGGAATATCATCACTCCTGCATCCGCCATCTTCATGAAGAATTTGGCAGCTTTTAGACAGTATTAGATCAACAAACATTTGTACAGATAAAGAGCAATCTTTCAAGGAAAAAACTGGGGAAATTTGTCACTTTGTTTTTTTTAGGACTGTTGGACTCCTGACCCTTGGAGCAATTCTTGCATTTTCTCATTTAGGTGAATGTTAAAGACTTTGGTTGTGTTTTTTTTTTCCTCCCCCTAAGCAGTTCTCTGTACAGATGTATAAGTGAACTCGGTGATTGTGTTTTCTTGTTGATCTTTCTTTGTTGAACATTGGACCATTACCTTCAGTTAACTGTAATATATTTTCTTTCCCCACCAATGAACTGCTCTATANATTAATGGGGGAAAATGGTACATTATGTGTACT
Protein		Refseq >NP_001073032\|tripartite motif containing 33 [Xenopus (Silurana) tropicalis] MADNKGGGGGGGETEGDASSNNNNNSNGAGQTGSSGDTESQTVEEPESVEKAPATAVPTDAPSEENPAPSSSSVASSSAAPAPTSSSSPLVVNLLDTCAVCKLSLQSRDSEPKLLPCLHSFCRRCLPEPERQLSVPLPGGTNGDIQQVGVIRCPVCRQECRQIDLVDNYFVKDTSEVPSSTDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHIITKKEDVSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLESVTKERQIKLVQQQNDITGLSRQIKHVMTFTNWAIASGSSTALLYSKRLITFQLRHILKARCDPVPAANGAVRFHCDPTFWAKNVVNLGNLVIENKPTAGFTPNVVVGQVPQGVNHVNKPPAQINLAQLRLQHMQQQVYAQKQQQLQMRMVQPPVQHQRPPAPQVMHQQPPRLISMQNMPRNNMNCGPFQAHQMRMAQNAAQNASRMPGIPRHNGPQYSMMQPHLQRQQHSNPGHAGPFPVVSVHNNTINPTSPTTATMANANRGPTSPSVTSIELIPSVTNPENLPSLPDIPPIQLEDAGSSTLDNLLSRYISMGHQLPQPTSTMNPSPAPSAMSPGSTDALEMCSHLPCTR	Refseq >NP_001089077\|E3 ubiquitin-protein ligase TRIM33 [Xenopus laevis] MADNKGGGGGGGETEGDASSNNNNNSNGAGETGSPGETESQAVEEPESAEKAPVAAVPTDTPAEENPAPSSSSVASSSATPASSSSSPLVVNLLDTCAVCKLSLQSRDTEPKLLPCLHSFCRRCLPEPERQLSVPGGTNGDIQQVGVIRCLVCRQECRQIDLVDNYFVKDASEAPNTDEKSEQVCTSCEDNASAVGFCVECGEWLCKTCIEAHQRVKFTKDHIITNKEDVSSESVGASGQRPVFCPVHKQEQLKLFCETCDRLTCRDCQLLEHKEHRYQFLEEAFQNQKGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKSLLQQLESVTKERQIKLVQQQNDITGLSRQIKHVMTFTNWAIASGSSTALLYSKRLITFQLRHILKARCDPVPAANGAIRFHCDPTFWAKNVVNLGNLVIENKPTTGFTPNVVVGQVPQGANHVNKPPAQINLAQLRLQHMQQQVYAQKQQQLQMRMAQPPGQHQRPSAPQVMHQQPPRLISMQSMPRNNMNCGPFQAHQMRMAQNAAQNAARMSGVPRHNGMQYSMMQPHLQRQHSNPGHAGPFPVVSVHNNTINPTSPTTATMANANRGPTSPSVTSIELIPSVTNPENLPSLPDIPPIQLEDAGSSNLDNLLSRYISLGHQLPQPTSNMNPSPAPSAMSPGSTGLSNSHTPVRPPSTSSTGSRGSCGSSSRTVERNSSFKSDPVKVKQEPGTEEEVCSFSGPVKQEKAEDGRRSACMLSSPESSLTPPLTTNVHLETDLESLAALENNVKTEPNNTSQSCRQSSHVSLVNGKSAVRNSMHRPPRGGGGGDGSNKDDDPNEDWCAVCQNGGDLLCCEKCPKVFHLTCHVPTLLSFPSGEWICTFCRDLNKPEVEYDCDNSQHSKKGKTVQGLSPVDQMKCERLLLYLYCHELSIEFQEPVPATIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQTPEDFVADVRLIFKNCERFNEMMKVVQAYADTQEINLQNDSEVAQAGKAVVLYFEEKLPAIYPDRTFQPLPEFEAEDDDGDVTDDSDDDDFVQPRRKRLKSEERPVHIK UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.20045	Xl.57890 [+] Xl.59257 Xl.2331
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		44 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	TRIM33	OMIM:188550
mouse		MGI	Trim33	All(7) Targeted, knock Out(2) Targeted, other(3)
zebrafish		ZFIN	trim33	23 Lines(s)

Publications
First:		Germ-layer specification and control of cell growth by Ectodermin, a Smad4 ubiquitin ligase. [Cell 2005]
Most recent:		Signaling crosstalk between TGFβ and Dishevelled/Par1b. [Cell Death Differ 2012]
		View All Papers 2 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		DNA binding histone acetyltransferase activity ubiquitin-protein ligase activity More[+] zinc ion binding
Biological:		protein ubiquitination regulation of transcription, DNA-dependent
Cellular Component:		intracellular ubiquitin ligase complex
EC:		histone acetyltransferase
KOG:		[O] Predicted E3 ubiquitin ligase (alt_id KOG:2177)

Reagents		tropicalis	laevis
Clones		EXRC - 1 clone(s)
		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.49003.1.A1_at [+] Str.20045.1.S1_at	Xl.2331.1.A1_at
Affymetrix 2.0			Xl2.32885.1.S1_at [+] Xl2.52576.1.S1_at Xl2.52576.1.S1_s_at Xl2.2331.1.A1_at

Symbol legend[+]