tcf3 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (86)

Nucleotides (381)

Interactants (256)

XB-GENEPAGE-478264

Gene Symbol: tcf3 Gene Name: transcription factor 3 Synonyms: e2a, itf1, tcf-3, xtcf3, xtcf-3, vdir, bhlhb21, tcfe2a Add Xenopus synonyms Gene Function: helix-loop-helix transcription factor Interactants: tcf7l1(38) , sia1(24) , lef1(22) , nodal3.1(16) , tcf4(14) , wnt8a(14) , chrd(12) View All	1/4

XB-GENE-478265

XB-GENE-865159

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001100273\|Xenopus (Silurana) tropicalis transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) (tcf3), mRNA GTAGCATTGGAACTAGTTACAGTTGCTGTTTCTCAGACAAGAAGACAGACCGCTGCACCCCCCTCCTCCTCCCAAATAACCCCCCCAGTCAGGAGGGGGGCACAGGAAGGACCCCAGAAATCATCAAACAGCCCCCTGCTCTGCTTTCAGCTTGAGGATAGTATAGCTGCGCCCAGACCTGCTTCTCCTGGGGGACTTATCCACTTCCTATCTCCATGCAATCCTTCTGGATGTTGACTTTGTGAAAAGGGGTCTGCCTTTTAATTGTGGAGGAGAATGAATCAACAGCAGAGGATGACAGCTGTGGGCACAGACAAGGAGTTAAGTGACCTCCTTGACTTCAGCATGATGTTCCCTCTACCTGTAGCTAATGGAAAGACCAGGCCTACTACCCTTGCTAGCACACAGTTTGGAGGATCAGGTTTGGAAGAGAGAACAGGCTCTGGACCATGGGGTACAGAAGATCACAATGGATCTAACTTTGACCAAGGAAGGGGTTATGGAGATGGATCACATTATGGGGAGCACAGGGAACTGCCATCACATGAAGGGAACTTATCTGCTCCTTTCCTTGCATCTGGTCTTGTAGGAAAAAATGAAAGACCTCCATATTCTACTTTTGGAAGAGACTCTGGGATGGCAATGAATCAGACTGGATTTCTTCCTGGAGACTTGGCAATGAACAGTCCTTCTGCTCTGTCACCAAATGCAGGAAAAGCAGGCTCACAATATTATACTTACCCCAACAATTCAAGGCGGCGACCAGGAGACAGTAACCTTGATGCCCAGCCAAAAAAAGTGCGAAAGGTACCACCAGGACTACCTTCTTCTGTTTACCCAGCAAACTCAGGTGATGAATACTGTGGTGACCGAGGAAGTTACGCCAACCCCAAGGCACCTAATTCAGTGTATCCTGGTGCATTCTACATGACAGATGGACTTCACAGTTCCTCTGATATCTGGGCTTCTTCAGGAGGGATTGGACAAGGAGGATACAGTTCAGTCCTGAATAGCTCTCAGTCCTCCGTTTCCCAGACCACAGGATTCAGCAGCCTGCATCCCCATGAACGAATGGGTTTTCCAATGCATTCTGGGGAGGTGAACCCTTCTGTGACTTCCAGTTTCTCCACTACCCCTGCACAGTATGGGGTTTCCAGCCATACACCCCCAATCAGTAGTGGGGACACTATGATAGGAAACAGAGGGACAGCCACTGGGAGCTCAGGAGATGCACTTGGAAAAGCACTAGCCTCAATCTATTCTCCAGATCATTCCAGTACCAACTTTTCCTCCACCCCATCCACACCTGTGGGTTCACCACAAGGAATAACAGGTTCAGGGCAGTGGCCAAGAGCAAGCGGTCCTGGAGCTTTGTCTCCTAGTTATGATGGAACACTTCACACGTTACAGAACAAGATGGAAGATCGCTTGGACGAAGCCATCCATGTTTTGAGAAGTCATGCTGTGGGGCAGACAGGCTCCCTTCCAGGAGGCCATGAGGACATTCACTCTCTTCTCAGTGCTACTGCTAGTGTTCTTGGAAGCGGCTTCCCTGCTGCTGTACTCTCTCTTGCCAATCGACATTCTATGTTAAACTCTCACACAGAAGAAGCCCTGCCTAGTGCTTCCAACATGCTACACAGTCAGGTCACTGTTCCTGCACAGCCAGGTTCACTGCCTGATCTAACCAGGCCACAGGATTCCTACTCAGGGCTTCCTGGGCTTGGAAGGGCAGTACCTCCAGGCAGAGCCCCAGAGATAAAAAGGGAGAGTAAAGAGGATGAGGAGAATAGATCTGTGGGAGATCTGTCAGATGATGAGAAGAAAGAGTCTAAGACACAGAGAAGTCGGACACGATGCTCAATAAACAGTGGAGGAAGCAGTAAAGAAGAGAGTAACTCTGTGGAAGAAAAGGACTCAAGGGATCGTGACAGGAGGATGTCAAATAATGCACGGGAGAGGGTGCGAGTACGAGACATCAATGAAGCTTTCAAGGAACTTGGTCGTATGGTGCAAATGCATATGAAGGCAGACAAGGCCCAAACCAAGCTCATCATCCTTCAGCAGGCCGTGCAGGTCATAATGACTCTGGAGCAGCAAGTGCGAGAGCGCAACTTGAATCCTAAAGCTGCCTGTCTCAAGAGGCGTGAGGAAGAGAAAGTTTCAGGTGTTGACCCTCAAATGGGCCTGTCTGGAGGACACCCTGGAGTTGGGGACTCTCACAACCCAGTGGGACACATGTGAGTTTCCACTGGAGCACTGGAACATTTTTCTCTACGATCCTTTGTTGCTGTTATTGTTTTTTTTATATTATTACAAATTTACTTTTGAATTTTTTTTTTCTTTGTGTTATGGAAAACCTCCACGACACGGAAGTCTTTGTGGCCTTGACTTTATTTTCCTGGAAATTTCCAATGGGGGATGGACAAAAAAAAACATTGACTCAAACTGACAACTTGTCTTTTCTGGACTCTTACAAAGCAAAGGAAGACAATGTGAGAAATTGCCTTAACTGAAAACAAAATCAAATCGGTTTATTTAAAGGAGGCTGCGGGGGGGAAGAAGGCTTGCCCAGATACTCCCTGCTACTAGTGAGTTGTGGGGAAGCAAGGATATTTTTCTGTCCTTGTACTTACACATCTACAACAAACTGACTTTTTTTTAATGAAATGAAAAATGGAAAACTGCGAAAAAAAAAAAAAAA	Refseq >NM_001086199\|Xenopus laevis transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) (tcf3), mRNA GATGTAACCAGTTACAGTTGCTGTTTCTCAGACAAGAAGACAGACCTCTGCACCCCCCTCCTCCTCCCAAATATCCCCCCAGTCAGGAGGGGGGCACAGGAAGGACCCCAGAAATCATCAAACAACCCCCATCTCTGCTTTCATCTTAAGGATAGTAAATCTGGGCTCAGACCTGCTTCTCCTGGGGGACTGATCCACTTCCTATCTCCATGCAATCCTTCTGGATGTTGACTTTGTAAAAAGGGGTCTGCCTTTTAATTCTGGAGCAGAATGAATCAGCAGCAGAGGATGACAGCTGTGGGCACAGACAAGGAGTTAAGTGACCTCCTCGACTTTAGCATGATGTTCCCTCTACCTGTGGCTAATGGGAAGACCAGGCCTACTACTCTGGCCAGCACGCAGTTTGGAGGAGGATCAGGTTTGGAAGAGAGAACAGGCTCTGCACCATGGGGTACAGAAGATCACAACGGATCTACCTTTGACCAAGGAAGGGGTTATGGAGATGGAACACATTATGGGGAGCACAGGGAACTGCCATCACATGAAGGGAACTTATCTGCTCCATTCCTTGCTTCTGGTCTTGTAGGAAAAAATGATAGACCTCCTTATTCAACTTTTGGTAGAGACTCTGGGATGACAATGAATCAGACTGGATTTCTTTCTGGAGATTTGGCCATGAACAGTCCTTCTGCCCTGTCACCAAATGCAGGAAAAGCAGGGTCACAATATTATACATACCCCAACAACTCACGGCGGCGACCTGGAGATAGTAACCTTGATGCCCAGCCAAAAAAAGTGCGGAAGGTACCACCAGGACTGCCTTCTTCCGTTTACCCAGCAAACTCAGGTGATGAATACTGTGGTGACCGAGGAAGTTATGCCTCCACTAAGACGCCTAATTCAGTGTATCCTGGTGCATTCTACATGGCAGATGGACTTCACAGTTCCGATATCTGGGCTTCTTCAGGAGGGATTGGACAAGGAGGTTACAGTTCAGTCCTGAATAGCTCTCAGTCCTCAGTCTCCCAGACCACAGGATTCAGCAGCCTGCATCCCCATGAGCGAATGGGTTTTCCAATGCATTCCGGGGAGGTGAACCCTTCTGTGACTTCCAGTTTCTCCTCTACCCCTGCACAGTATGGAGTTTCCAGCCATACACCCCCAATCAGTACTGGGGATACTATCATAGGAAACAGAGGGACAGCCACTGGGAGCTCAGGAGATGCACTTGGAAAAGCACTAGCCTCAATCTATTCTCCAGATCATTCCAGTACCAACTTTTCCTCCACACCATCTACGCCTGTGGGTTCTCCACAAGGAATAACAGGTTCAGGACAGTGGCCAAGAGCAAATGGCCCCGGAGCTCTGTCTCCTAGTTATGATGGAACACTTCACACGTTACAGAACAAGATGGAAGATCGCTTGGATGAAGCCATCCATGTCTTGAGAAGTCATGCTGTGGGGCAGACGGGCGCCCTTCCAGGAGGCCATGATGACATCCACTCTCTTCTCAGTGCTACTGCTAGTGTTCTTGGAAGTGGCTTTCCTGCTGCTGTGCTCTCTCTTGCCAATCGACATTCTATGTTAAACTCTCACACAGAAGAAGCCCTGCCTAGTGCTTCCAACATGCTGCACAGCCAGGTCACTGTTCCTGCACAGCCAGGTTCACTTCCTGATCTAACCAGACCACAGGATTCCTACTCAGGGCTTCCGGGGCTTGGAAGGGCAATACCTCCAGGCAGAGTCCCAGATATAAAAAGGGAGAGTAAAGAGGATGAGGAGAACAGATCTGTGGCAGATCTGTCAGATGATGAGAAGAAAGAGTCTAAGCCACAGAGAAGTCGGACACGCTGCTCAATTAACAGTCAAGATGAGGATGAAGATGAAGATGATGATAACCTTCCCCCAGAGCAAAAAGCAGAGCGTGAGAAGGAGAGAAGGGTAGCTAACAATGCTCGAGAGCGGCTTCGTGTCAAAGACATCAACGAAGCTTTTAAAGAGCTGGGGAGGATGTGTCAACTGCACCTCAACAGTGAGAAACCGCAGACTAAGCTACTGATTCTGCACCAGGCAGTCTCTGTCATCCTCAGCCTCGAGCAGCAAGTGCGAGAGCGGAACCTGAACCCAAAAGCTGCCTGTCTTAAGAGGCGTGAGGAAGAGAAAGTTTCAGGTGTTGACCCTCAAATGGGCCTGTCTGGAGGACACCCTGGCGTTGGGGACTCTCACAACCCAGTGGGACACATGTGAATTTCCACTGGAGCACTGGAACATTTATCCCTATGAACCTTTGTTGCTGTTATTGTTTTTTTTTATATTATTATAAATTTACATATTTTTCTTTGTGTTTTGGAAAACCTCCAAAACACAGAAGTCTTTGTGGCCTTGACTTTATTCTCCTGAGATGTGGACACTCGCTGGAAATTTCCAATGGGGGAAGGACAAAAAACATTGACTCATACTGACAATTTGTCTTTTCTGGACTTTTATAAAGCAAAAGAAAGACAATGTGAGAAATTGCCTTAACTGAAAACAAAATCAAATCGGTTTATTTAAAGGAGGCAGCAGGGGGAAGGATGCTTACTCGAATACTCCCTGCTACTAGTGAGTTGTGGGGAAGCAAGGATAATTTTTCTGTCCTTGTACATTCACATCTACAACAAACTGAATTTTTTTTAAAATAAAAGAAAAATTAAAAACCGCGAAAAAAAAATAGTTAGGCATCATAGAAAAAATGTTTTTAAACTTAGAACAAAATAGAAATAATTATTTTTTTCAGGATTTTTTTTTTTCTTACAGTAACCTTTTTATATAAAAATAAATGCTGAACAAAAAATTTAAAAACAGAAAAGGAACCCTACCCTATACACTTGATTGTAACCCTGCCCCTTAATTCCATCTTGCACACCCTAGTTCTACCTTTTTATCTGCCGTTGTACTCCCTACACTACCTTGCTGCTGATCATTTTCCTTGGGCATATCCTGCACTCCTTTATTGGTGATTTAGAAGCAAAACTACTCCATTCTGCAAACAAACAAAATGCAAAGAACAACTGTTGCATTGCAGATGATATGTGAACTCTTTAGCAAAAAAATTATTTTGGGTGGGTTATTCCAATCTTGGAACTCTTTGTATTAGATGAGTGCTTCCCTAATTACATCCAGTGTTGGGGGAGGTTTAAGATTTTTAAAAACAAACAGAATTATGCTCTTTGATTTATATTCCACAAAAATATCGTCTTCAACTTAGTATAATGTTAGTTTACAGAGCATTGTTTCTGATGGATGCGAAGGGTTGTTGAACAAATTACCCATCAGATCTAATTAATAAAATGTATTTTCTAAAATTATTACAAACCCTCATCTTCACATTTAGACTCCCTTATATTGCCCCTTTCACTTTTATGACTTTCCTTTTTAAAAACCTTACTGCAATTTGTTTTAACTTTTGTTTTTTTATAAAAATGTCTTGCTGTATTTTTTTAATTGATTCTATATATAAAAAATATTTACTGAAAGACCTGTTTTAACTCTCTGAATACATAATACAGCTGTAGCTCATGGCACATCAGCTGACACCCGAATGAAGAGCTATCTGGACTGTCTGTCTTAGTTCACTCTCCCACAGCTTTTTATAAGGGCTGTGCATCAGTGTAGAAATATGTAGCATTAAATGTTAGGGTGCAGAATATACCCTTATTTTTGTAGATATGTGTTGTTTGGAAGGGTTGCAGTGGGATTTTGGAATATTTCTGGAAAACTGCCTTCAGACATTCGTAAATATATATTTTTAATATTTTATTTTAAATATCCTGCCTTTTAACATGTCCAGCTATGCTTATTACTTGTTACTGTCCTTATACTTCTCTTGGTATTCACAGTTTTGTCTTTGCAATAGAGTTGAATGTACTGTGAGAGGATAAAAGGGGGGGGGGTCTGCTCTAGCCATAATTTACAAGCTATGAAGACTTGTTTTATAGCATGGGTTTAATTATTGTATGATTTAGAAACAGAATGCCTTGAGTCTATGTTCTCAACAGAAATAAGCATGGTCAACTCCCAGAATCCTTCTCTAGGCATGTCATTCAGCTTTGTATATTTTTATTGTCCTCTATGTTTTTGTTTATAAATTTTAATTTGTTTAATACTATCACGCAAATGACAATAACGTTTTGCTCCATATTACAAAGGTAGGGAATGAAGAGGCCTTAATACCCAAAATCAAGTAATTACAACTCAAAAGTATTTTAGAAAGACAATACATATTTTTGTTGAAGAAGCACAAACAGAAAACAAATGGTATTTCTTTAGTGCCTCGGACATTTTTAGTTTTTTTTTGTTTTTTTTCTAAATAATTTTATATGTGTCAAATCAGCTGGCTGGAATATTTGGAATTTTTAATAACAAAAATAATAATCCTAACTTTTTTTTAAGTAGGTTTTGAGAACTGTCCTGTACATAAATCTGTGTTGCAGCAATACATGTAAGCTTTTATAACTATATAACTTCTTGAATCCCGTTCTTTCAGATGTTGTATACGATGAATGATAAAAAGAAAATACATTTAAAAAAAACCCATTGTAATAAAGATTTGCATTGTATTAAAAAAAAAAAAAA
Protein		Refseq >NP_001093743\|transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) [Xenopus (Silurana) tropicalis] MNQQQRMTAVGTDKELSDLLDFSMMFPLPVANGKTRPTTLASTQFGGSGLEERTGSGPWGTEDHNGSNFDQGRGYGDGSHYGEHRELPSHEGNLSAPFLASGLVGKNERPPYSTFGRDSGMAMNQTGFLPGDLAMNSPSALSPNAGKAGSQYYTYPNNSRRRPGDSNLDAQPKKVRKVPPGLPSSVYPANSGDEYCGDRGSYANPKAPNSVYPGAFYMTDGLHSSSDIWASSGGIGQGGYSSVLNSSQSSVSQTTGFSSLHPHERMGFPMHSGEVNPSVTSSFSTTPAQYGVSSHTPPISSGDTMIGNRGTATGSSGDALGKALASIYSPDHSSTNFSSTPSTPVGSPQGITGSGQWPRASGPGALSPSYDGTLHTLQNKMEDRLDEAIHVLRSHAVGQTGSLPGGHEDIHSLLSATASVLGSGFPAAVLSLANRHSMLNSHTEEALPSASNMLHSQVTVPAQPGSLPDLTRPQDSYSGLPGLGRAVPPGRAPEIKRESKEDEENRSVGDLSDDEKKESKTQRSRTRCSINSGGSSKEESNSVEEKDSRDRDRRMSNNARERVRVRDINEAFKELGRMVQMHMKADKAQTKLIILQQAVQVIMTLEQQVRERNLNPKAACLKRREEEKVSGVDPQMGLSGGHPGVGDSHNPVGHM	Refseq >NP_001079668\|transcription factor E2-alpha [Xenopus laevis] MNQQQRMTAVGTDKELSDLLDFSMMFPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGTHYGEHRELPSHEGNLSAPFLASGLVGKNDRPPYSTFGRDSGMTMNQTGFLSGDLAMNSPSALSPNAGKAGSQYYTYPNNSRRRPGDSNLDAQPKKVRKVPPGLPSSVYPANSGDEYCGDRGSYASTKTPNSVYPGAFYMADGLHSSDIWASSGGIGQGGYSSVLNSSQSSVSQTTGFSSLHPHERMGFPMHSGEVNPSVTSSFSSTPAQYGVSSHTPPISTGDTIIGNRGTATGSSGDALGKALASIYSPDHSSTNFSSTPSTPVGSPQGITGSGQWPRANGPGALSPSYDGTLHTLQNKMEDRLDEAIHVLRSHAVGQTGALPGGHDDIHSLLSATASVLGSGFPAAVLSLANRHSMLNSHTEEALPSASNMLHSQVTVPAQPGSLPDLTRPQDSYSGLPGLGRAIPPGRVPDIKRESKEDEENRSVADLSDDEKKESKPQRSRTRCSINSQDEDEDEDDDNLPPEQKAEREKERRVANNARERLRVKDINEAFKELGRMCQLHLNSEKPQTKLLILHQAVSVILSLEQQVRERNLNPKAACLKRREEEKVSGVDPQMGLSGGHPGVGDSHNPVGHM UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		[+] Str.24919 Str.46827 Str.56537	Xl.3864 [+] Xl.74390
Unigene EST Profile			EST Profile
GEO data			GEO
Images		85 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	TCF3
mouse		MGI	Tcf7l1	All(5) Targeted, knock Out(1) Targeted, other(3)
zebrafish		ZFIN	tcf3

Publications
First:		Methylation of adenovirus genes in transformed cells and in vitro: influence on the regulation of gene expression? [Eur J Cell Biol 1981]
Most recent:		Maternal Mga is required for Wnt signaling and organizer formation in the early Xenopus embryo. [Acta Biochim Biophys Sin (Shanghai) 2012]
		View All Papers 13 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:		[K] Helix loop helix transcription factor

Reagents		tropicalis	laevis
Clones			EXRC - 6 clone(s)
			open biosystems
			geneservice/RZPD imagenes
Affymetrix 1.0		Str.24919.2.S1_at [+] Str.24919.2.S2_at Str.24919.2.S3_at Str.46827.1.A1_at	Xl.3864.1.S1_a_at [+] Xl.3864.2.S1_at Xl.3864.2.S2_at
Affymetrix 2.0			Xl2.3864.1.S1_a_at [+] Xl2.3864.2.S2_at Xl2.34733.1.A1_at Xl2.54829.1.S1_at Xl2.20070.1.S2_x_at Xl2.20070.1.S2_at Xl2.3864.2.S1_at

Symbol legend[+]