twist1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (97)

Nucleotides (196)

Interactants (302)

XB-GENEPAGE-479801

Gene Symbol: twist1 Gene Name: twist basic helix-loop-helix transcription factor 1 Synonyms: Xtwi, X-twi, twist, Xtwist Add Xenopus synonyms Gene Function: transcription factor Interactants: snai2(48) , snai1(30) , sox2(22) , foxd3(18) , myod1(17) , egr2(15) , sox9(15) View All	1/6

XB-GENE-479802

XB-GENE-865309

XB-GENE-6255840

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_204084\|Xenopus (Silurana) tropicalis twist homolog 1 (twist1), mRNA GACTGTGCTATAGGGCTGGGCGCACTCCCCCCACCCACCCACCCACCTCAGCACCTTGGAGAAGACTTTGCTCGGGAGATCTGTTGGGACAGAGCCTGCCCTCTGCCCGGGACCTTCTCCTGATTGTGCTGGGAGAAAATGATGCAGGAAGAGTCCAGCTCCCCAGTCTCCCCAGTAGACAGTCTAAGTAACAGCGAGGAAGAGCTTGACAGGCAGCACAGCAAGAGGGGATGCAGAAAGAAGCGATCCACTAGGAAAAGCCCTGAGGATCCCGACAGCCCCATCTCAGTGAAGCGCAACAAGAAGTCCAGCAGCACCGGCAGCAGCCCGCAATCCTTTGAAGAACTGCAAAGCCAGAGGGTCATGGCCAATGTCAGGGAGCGCCAGAGGACCCAGTCCCTAAATGAAGCCTTCGCAGCCCTGAGGAAGATCATCCCCACCCTCCCCTCTGACAAACTGAGTAAAATCCAGACTCTCAAACTGGCATCCAGATACATCGACTTTCTCTGCCAGGTCTTACAGAGCGACGAGCTGGACTCCAAAATGGCCAGCTGCAGTTATGTGGCCCATGAGAGGCTCAGCTATGCATTTTCAGTGTGGAGGATGGAGGGAGCATGGTCCATGTCTGCATCTCACTAACAGGAATGCCACTACAGCACAGGCCACACAGAAAGACGATACTTTAACCAATGAATGGGAAATGGACAGTGTAGAAACTGGAGCTGGATACCCAAAACAATTAAATCTGAGGATTTTTGTGCATTAGGGTGAAAGGGCCGAAGCGAATGAAGGCGTGCGGAGCACTTACAGAGCAAATCTGCCCTGGGACACTGAATTTATACAGCAGGGAGCCGTGTAGGTTCGCCAAATCCATTCCATTCTGATCCTGAACAATCTCTCATCTGGACTTTGACGAAGAATGTTGGAAATTATTTTCTTTAATTCGTTTTTCCTTGTACTTTTTGTATACTGCATGCATGCGTTACCACCAGTCGTGCCTTTGAAGCCACTTTAGAGGAAAATATTTGAACATTCCCATTCTTGAAGGTTTCTATCGAAATCCATTTTTTTAAATAGGAAGGAAAAAAATACTATTTTTGCTATTTGATTCTTGGTTCAGAAAACTGTTTCTATACAAGCGGCGGCATCTCTTTATTCATCACCTGAGAAAAAAAGTTAACATTTATTTATTTATTGATCCATGTTTAAAAAAAAAAATGCAACTAGATCCGGTGTCTAAATGCATTCATATTTTTTATGGTTGTTTTGTAAATATCATTGTATATTATTTTTCTGCAATAAATAAATATGATTGAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001085883\|Xenopus laevis twist homolog 1 (twist1-a), mRNA GAGACGTTGGCGCCTGGGGACACACTGTGATAGGGCTGGGCGCGCTCCCCCACCCACCCACCCACCTCAGCACCTTGGAGAAGACTTCTCATCTGTTGGGACAGAGCCTGCCCTCTGCCCGGGACCTTCTCCTTATTGTGCCGGGAGAAAATGATGCAGGAAGAGTCCAGCTCGCCAGTCTCCCCAGTAGACAGTCTGAGTAACAGCGAGGAAGAGCTTGACAAGCAGCAGAGCAAGAGGGGATGCAGAAAGAGGCGATCTGCTAGGAAAAGCCCCGAGGATCCCGACAGTCCGATCTCAGTGAAGCGCAACAAGAAGGCGAGCAGCACCGGCAGTAGCCCCCAGTCCTTTGAGGAGCTGCAGAGTCAGAGGGTCATGGCCAATGTCAGGGAGCGTCAGAGGACTCAGTCCCTCAACGAAGCCTTCTCGTCCTTGAGAAAGATCATCCCCACCCTCCCCTCGGACAAACTGAGTAAAATCCAAACGCTCAAACTGGCCTCCAGATACATCGACTTTCTCTGCCAGGTCTTACAGAGCGACGAGCTGGACTCCAAAATGGCCAGCTGCAGTTATGTGGCCCATGAGAGGCTCAGCTATGCCTTCTCCGTGTGGAGGATGGAGGGAGCCTGGTCCATGTCTGCATCTCACTAACAGCAATGCCACTACAGCTCAGGCCACACACAAAGATTATACTTATACCAATGAATGGGAAAAAAAACGGACAGTGTAGAAACTGGAGCTGGATCCCCAAAACAATTAAGTCTGAGGATTGTTTTTTGCGTTAAAGGGAGAAAGGGCCGAAGCGAATGAAGTCGTGGGGAGCACTTACAGAACAAATGTGCCCTGGGACACTCAGTCTATACAGCAGGGAGCCGTGTAGGTTCGCCAAATCCATTCCATTCTGATCCTGATCAAACCTCTCATCTGGACTTTTGACGAAGAATGTTGGAAACTAATTTTTTAAATTAATTTTCCTTGTACTTTTTATATACTGCATGCATGCGTTGCCACCAGTCGTGCCTTTGAAGCCACTTAAAGAGGAAAATATTTGAACATTCCCATTCTTGAAGGTTTCTATCGAAATCCATTTTTTTATAGAAAGGAAAAAAAAACACTATTTTTGCTATTTGATTCTTGGTTCAGAAAACTGTTTCTATGCAAGCGGCGGCATCTCTTTTATTCATCACCTGAGAAAAAAAAAGTTAACATTTATTTATTTATTGATCCATGTTTTAAAAAAAAAAAATGCAACTAGATCCGGTGTCTAAATGCATTTCATATTTTTTATGGTTGTTTTGTAAATATCATTGTATATTATTCTTCTGCAATAAATAAATATGATTGAACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA		Refseq >NM_001097742\|Xenopus laevis twist homolog 1 (twist1-b), mRNA CTTGGAGAAGACTTGACACGGGACATCTGTAGGGACAGAGCCTGCCCTCTGCCCGGGACCTTCTCCTGACTGTGCCGGGAGAAAATGATGCAGGAAGAGTCCAGCTCGCCAGTGTCCCCGGTAGACAGTGCGAGTAACAGCGAGGAAGAGACTGACAGACAGCAGAGCAAGAGGGGATGCAGGAAGAAGCGAGCCACTAGGAAAAGCCCCGAGGATCCCGACAGTCCGAGCTCAGTGAAGCGCAACAAGAAGGCGAGCAGCACGGGCAGTAGCCCCCAGTCCTTTGAGGAGCTGCAGAGTCAGAGGGTCATGGCCAATGTCAGGGAGCGTCAGAGGACTCAGTCCCTCAATGAAGCCTTCGCAGCCTTGAGAAAGATCATCCCCACCCTCCCCTCGGACAAACTGAGTAAAATCCAAACGCTCAAACTGGCCTCCAGATACATCGACTTTCTCTGCCAGGTCTTACAGAGCGACGAGCTGGACTCCAAAATGGCCAGCTGCAGTTATGTGGCCCATGAGAGGCTCAGCTATGCCTTCTCCGTGTGGAGGATGGAGGGAGCGTGGTCCATGTCTGCATCTCACTAACAGCAGTGCCACTACAGCTCAGGCCACACACACAGACAATACTTTTACCAGTGAATGGGAAAATGGACAGTGTAGAAACTGGAGCTGGATATCCCAAACAATTAAATCTGAGGATTTTTGTGTGTTAGGGTGAAAGGGCCGAAGCGAATGAAGGCGTGCGGAGCACTTACAGAGCAAATGTGCCCTGGGACACTCAGTCTATACAACAGGGAGCCGTGTAGGTTCGCCAAATCCATTCCATTCTGATCCTGATCAAATCTCTCATCTGGACTTTGACGAAGAATGTTGGAAATTATTATTTTTTTAATTCATTTTCCTTGTACTTTTTTTTTATATACTGCATGCATGCGTTACCACCAGTCGTGCCTTTGAAGCCACTTAAGAGGAAAATATTTAAACATTCCCATTCTTGAAGGTTTCTGTCGAAATCCATTTTTTTTTTTTAAAAATAGGAAGGACTATTTTTTTTTCTATTTGATTCTTGGTTCAGAAAACTGTTTCTATACAAGCGGCGGCATCTCTTTATTCATCACCTGAGAAATTTATTTATTTATTGATCCATGTTTAAAAAAAAAAAAAAAATGCAACTAGATCCGGTGTCTAAATGCATTCATATTTTTTATGGTTGTTTTGTAAATATCATTGTATATTATTTTTCTGCAATAAATAAATATGATTGAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_989415\|twist homolog 1 [Xenopus (Silurana) tropicalis] MMQEESSSPVSPVDSLSNSEEELDRQHSKRGCRKKRSTRKSPEDPDSPISVKRNKKSSSTGSSPQSFEELQSQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLASRYIDFLCQVLQSDELDSKMASCSYVAHERLSYAFSVWRMEGAWSMSASH	Refseq >NP_001079352\|twist-related protein [Xenopus laevis] MMQEESSSPVSPVDSLSNSEEELDKQQSKRGCRKRRSARKSPEDPDSPISVKRNKKASSTGSSPQSFEELQSQRVMANVRERQRTQSLNEAFSSLRKIIPTLPSDKLSKIQTLKLASRYIDFLCQVLQSDELDSKMASCSYVAHERLSYAFSVWRMEGAWSMSASH UniProtKB		Refseq >NP_001091211\|twist homolog 1 [Xenopus laevis] MMQEESSSPVSPVDSASNSEEETDRQQSKRGCRKKRATRKSPEDPDSPSSVKRNKKASSTGSSPQSFEELQSQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLASRYIDFLCQVLQSDELDSKMASCSYVAHERLSYAFSVWRMEGAWSMSASH

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.3251	Xl.879 [+] Xl.68451		Xl.23366
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		82 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	TWIST1	OMIM:101400
mouse		MGI	Twist1	All(6) Targeted, knock Out(2) Chemically Induced(3) Targeted, other(1)
zebrafish		ZFIN ZFIN	twist1a twist1b

Publications
First:		Facile cruciform formation by an (A-T)34 sequence from a Xenopus globin gene. [J Mol Biol 1985]
Most recent:		The XenopusTGFBI is required for embryogenesis throughregulation of canonical Wnt signalling. [Dev Biol 2013]
		View All Papers 29 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:		[K] Transcription factor TWIST

Reagents		tropicalis	laevis a		laevis b
Clones		EXRC - 7 clone(s)	EXRC - 2 clone(s)
		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.3251.2.S1_a_at	Xl.879.1.S1_s_at
Affymetrix 2.0			Xl2.879.1.S1_s_at		Xl2.56708.1.S1_at

Symbol legend[+]