zic1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (64)

Nucleotides (219)

Interactants (246)

XB-GENEPAGE-481981

Gene Symbol: zic1 Gene Name: Zic family member 1 Synonyms: Zic-r1, opl, odd-paired-like, Zinc finger protein of the cerebellum 1, Zic-related-1 Add Xenopus synonyms Gene Function: zinc finger, C2H2 type Interactants: snai2(19) , sox2(16) , pax3(15) , zic3(14) , foxd3(13) , chrd(12) , myc(12) View All	1/5

XB-GENE-481982

XB-GENE-864815

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		NCBI Nucleotide >CT030094\|Xenopus tropicalis finished cDNA, clone TGas047m04 CTTTTTTTTTTTTTTTTAATATTTTTCCTACCAAGCCTGCAGGAATCAAAAGGTCTCATTCTTCATTTTATTCGGTCCCGGTTCTATTGGCAGCTTTAGGATAACCTTGGAAGTGTTCATTAATTTGAAGTCTTTTTTGTTTTAAATATGTGTTTAAACGTACCATTCGTTAAAATTTGATGAAAGCGTGCTGTGACTGGACGTGTGATGTACTGCTGAAGGAGACACGATTGTTGGGGGCGTTGAAGATTCATAGCCTGAACTGGCTGCTGGGGAAGGCTGAGACCCCTGGGAAGATGATTCGTGGACCTTCATGTGCTTCCTGAGGGAGCTCGGGTGGGTGTACGACTTGTCGCACATTTTACACAGATACGGCTTGTCTGATGTATGAACGTGCATGTGCTTTTTACGATCACTGCTATTTGCAAATCGTCTGTCACAGCCTTCAAACTCACACTTAAACGGTTTTTCACCTGTGTGAGTTCTTTTGTGGATCTTGAGATTTTCCGATCTTGCAAACACTTTGCCACATCCAGGGAAGGGGCAAGGGAAAGGCTTTTCACCTGTGTGCACTCTGATGTGATTGACCAGTTTGTATTTAGCCTTGAAAGGTTTCCCTTCTCTGGCACATTCCTCCCAGAAGCAGATGTGGTTGGACTGCTCTGGGCCCCCGACGTGCTCCACTGTGACATGGGTGACCAGCTCATGCATGGTGCTGAAAGTTTTGTTGCACGACTTTTTGGGGTTGGCCAACTGCTCTGGCTCAATCCATTTGCAGATGAGCTCTTGCTTGATGGGCTGCCTCATGTAACGAAAGAAGGCCCCTGCTCCATGGTGGGCAGCCATGTTCATGTTCATAGGGCCGTAGCCATGCAGTTGGCTGGACGCGTAGTGCTCAGACCTGGGGCTGGTGACTTGCCCGTACTGATCGGACCTGCCATACATGTCCCCAGAGAAGCCCAGCCTCATCTGTCCGTTCACCACATTGGGAGAAGCGTGGCTGCTGGCTTGCTCATGGAGACCTGGGAAAATCAAGTGGCCCGTAGTGTCAGTGTGGGGCCCATGGGGTCCAGCAAAGCCCCCTGCGGCGGAGGCGAATAGGCTGTGCTGGGCGCTGGCGGCCTCCCCGAAGCCCCGGTTGCGAAAGAGAAAGTCCCGGGTGGAGTTGAAGGCAGCGCTGGAGTAGGAGCTGACATGGCCCGGGTGGTGATGGTGCCCCAAAGC	Refseq >NM_001090330\|Xenopus laevis Zic family member 1 (zic1), mRNA AATTGGCATTTCCTAGTCAGCCCAGTGTCAGTGGTCGGTGTGTTGTAGCTCAGAGGCGCGCCATGCAGCAGTAGATGCGACTGTCCTGAAGTCGGTGCGATTGTGCCATCTGCACGTACACAAGTGTACGACCCCCCCTACTGCCCGTGTGCCGCTCATTCGCTGCCCATTGTTGGAAGACTTGCCACCATGCTGCTGGACACCGGAGCCCAATACCCAGCGATCGGAGTGACGACTTTCGGTTCCTCCAGGCACCACTCGGCTGGCGATGTGACGGATCGAGAGGTGGCCCTGGGCATCAATCCCTTCGCAGACGGCATGGGAGCTTTCAAACTCAACCCGAGTAGCCACGATCTCGCCTCAGGTCAGACCGCTTTCACTTCGCAGGCTCCGGGCTACGCTGCGGCCGCTCTGGGGCACCATCATCACCCGGGACATGTCAGCTCTTACTCCAGCGCTGCCTTTAACTCCACCCGGGACTTTCTCTTCCGCAACCGGGGCTTCGGGGAGGCCGCCAGCGCCCAGCACAGTCTATTCGCCTCCGCCGCGGGGGGCTTCCCCGGACCCCATGGGCCCCACGCTGATACCACGGGCCACTTGATTTTCCCTGGACTCCACGAGCAAGCAGCCAGCCACGCTTCTCCCAATGTGGTGAACGGACAGATGAGGCTGGGCTTCTCGGGGGACATGTATGGCAGGCCCGACCAGTACGGACAGGTGACTAGCCCCAGGTCTGAGCATTATGCCTCCAGCCAACTGCACGGCTACGGCCCTATGAACATGAACATGGCTGCCCACCATGGAGCAGGGGCTTTCTTCCGTTACATGAGGCAGCCCATCAAGCAAGAGCTCATCTGCAAATGGATTGAGCCCGAGCAGTTGGCCAACCCCAAAAAGTCGTGCAACAAAACTTTCAGCACCATGCACGAGCTGGTCACCCATGTTACTGTGGAGCACGTTGGGGGCCCAGAGCAGTCCAACCACATCTGTGTCTGGGAAGAATGTCCAAGAGAAGGGAAACCTTTCAAGGCCAAATACAAACTGATCAACCACATCAGAGTGCACACAGGCGAAAAGCCTTTCCCTTGCCCCTTCCCTGGATGTGGCAAAGTCTTTGCGCGATCAGAAAATCTCAAGATCCACAAAAGAACTCACACAGGTGAAAAACCCTTTAAGTGCGAGTTTGAAGGCTGTGACAGACGATTTGCCAATAGCAGTGATCGTAAAAAGCACATGCACGTTCATACATCGGACAAGCCGTATCTGTGTAAAATGTGCGACAAGTCGTACACCCACCCCAGCTCCCTCAGGAAGCACATGAAGGTCCACGAAGCATCTTCCCAAGGGTCTCAGCCTTCCCCAGCAGCCAGTTCAGGCTATGAATCTTCAACGCCCCCAACAATCGTTTCTCCTTCTGCAGAAAACCAGAGCACAAGTTCCTTATCCCCCAGCTCCTCAGCAGTACATCACACGTCCAATCACAGCACGCTCTCGTCAAATTTTAACGAATGGTACGTTTAAACACATATTTAAAACAAAAAAAGACTTCAAATAAATGAACACTTCCAAGGTAATATCCTAAAGTTGCCAATAGANCCGGGACCGAATAAAATGAAGAATGAGACCTTTTTTTTTAAATTCCTGCAGGCTTGGTAAGAGAGAAAAAAAAAAAAACCRCCCAAGGATTTTTTTTAAAAAAATAAAAATTATGAAAAGACMAGGCCAAATGCYAACTGTGTAGGTTTCTGATGAACCACTAATTAAAGGTCTCAATCTGCATGTCTCATCGGGCAGCCATGGCCTTTTTTTTTTTGTAAATACAGAATTATTAGTTAAAAAACAAATGTACTGTTGATTTTGTAAATAGTTATATTACAACCGAAAAGGGATCTGTGGAATTGTGGTCACTGCATATTTGTGTTGGGAGAGGGAGGGGTAACAGGGAGGACGACATTTATTTGGATGGAAAGAATGTACTAGTGAATATGTACCAAAATGTGAAATACCTTGTATTATTCCAGTCTGAGCGTCCACCTAACAGACTATTAATGATATAAGTGTGCTTAATGTATAAAGTGCAAAATCTACGTCCCAAAGTCCAGTCTGGTTAGTGCAGTAAAATGTTGTTTTTTTTTCACGTCCTGTCAATAATTTGTATAGTGCAAAGCCTGGAAATCCTTGTCAAACTGTTACACTTTGTTTATGTAAAGTGATATTATTAAAAGCTAAAACAACAACTCTATATATCTGTCCATTGCTTTTAAACAAATACCACATCCTAATGTGTATATAGCCCATCATTTTTCATATTTATCCGCATGTAAAAAAAAGGCCGGCTCTACATGTTAACAGATATTCAATATTTATGGATAGAAAATAAAAAAAAATTCGTATGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCGAG
Protein			Refseq >NP_001083799\|zinc finger protein ZIC 1 [Xenopus laevis] MLLDTGAQYPAIGVTTFGSSRHHSAGDVTDREVALGINPFADGMGAFKLNPSSHDLASGQTAFTSQAPGYAAAALGHHHHPGHVSSYSSAAFNSTRDFLFRNRGFGEAASAQHSLFASAAGGFPGPHGPHADTTGHLIFPGLHEQAASHASPNVVNGQMRLGFSGDMYGRPDQYGQVTSPRSEHYASSQLHGYGPMNMNMAAHHGAGAFFRYMRQPIKQELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHICVWEECPREGKPFKAKYKLINHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHEASSQGSQPSPAASSGYESSTPPTIVSPSAENQSTSSLSPSSSAVHHTSNHSTLSSNFNEWYV UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.52533 [+] Str.65595	Xl.1796
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		34 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	ZIC1
mouse		MGI	Zic1	All(3) Targeted, knock Out(2) Targeted, other(1)
zebrafish		ZFIN	zic1

Publications
First:		Uptake of 3H-glycine in the outer plexiform layer of the retina of the toad, Bufo marinus. [J Comp Neurol 1984]
Most recent:		Pax3 and Zic1 drive induction and differentiation of multipotent, migratory, and functional neural crest in Xenopus embryos. [Proc Natl Acad Sci U S A 2013]
		View All Papers 16 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		nucleic acid binding zinc ion binding
Biological:
Cellular Component:		nucleus
EC:
KOG:		[R] FOG: Zn-finger

Reagents		tropicalis	laevis
Clones			EXRC - 1 clone(s)
		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.17224.1.S1_at [+] Str.10944.1.S1_at	Xl.1796.1.S1_at [+] Xl.1796.1.S2_at
Affymetrix 2.0			Xl2.1796.1.S2_at [+] Xl2.1796.1.S1_at

Symbol legend[+]