hoxd1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (29)

Nucleotides (135)

Interactants (224)

XB-GENEPAGE-482730

Gene Symbol: hoxd1 Gene Name: homeobox D1 Synonyms: xlab, mgc131028, xhox.lab1, Xhox.lab, xhoxd1, Xlab-1 Add Xenopus synonyms Gene Function: homeodomain transcription factor Interactants: egr2(15) , en2(12) , otx2(12) , hoxc6(10) , hoxb9(8) , hoxa1(7) , hoxb4(7) View All	1/9

XB-GENE-482731

XB-GENE-482735

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001016678\|Xenopus (Silurana) tropicalis homeobox D1 (hoxd1), mRNA AAAGATTGAGGGATCATCAGGTTCCTCAGCTGTCCGGCCGGAGAAGTCTCCCTAGAGATGAATTCCTACCTAGAATACACTTCTTGCGGGGATGTTGTAGCCTTTTCACCCAAGTTCTGCCGCAGCGACCAAAGAAACATGACCTTGCAGCCTTACCCTGGCAGTGGAGCAGATCATCCCTTTATGCCAGTTGGAGGTGTGCCTGGCTCCGTTGCCCACCAGGCTTCTCACCAGTCTCCAGCACTTTATGCTCCATGCAGCCTAGATGTCGCTTATGAGCCACCCCCACCTTCTGATTACAGTTTCTTACATAGCAGCACCGATTACGACTATTATGGATCTAATCACTTGGTAGAAGAGACTGGGGGCCACATTCCCTATGGCAGTTCTGTATTCCCAGGGAATGGATCGTACATCCTCAATGGGCAGCTGAGCTACAGGACTCTTGGAGAAGAAACCCAAATGGCTCAAATCGCCCAATGTAAGGAACCACTAGAAGTTTATCCTGGGGGCAACTTGCAGAGTATCTCCCCTTCGCCTGGCACTTACCCAAAACCTGCCTCCCCGGCGTCTGACACCCATGTCAGCACGTTTGATTGGATGAAAGTTAAAAGGAACCCACCTAAGAAAAGTTTACAATCTGAATATGGGGTAGCAAGTCCCCCCTGCACCGTGAGGACAAACTTCACCACCAAACAACTGACTGAACTCGAAAAGGAGTTTCATTTTAACAAGTATCTCACCAGGGCAAGACGCATCGAAATCGCAAACTCCCTCCAACTCAACGATACTCAGGTTAAGATCTGGTTCCAGAATAGGCGAATGAAACAAAAGAAAAGGGAAAGGGAGGGGTCTTTGCCCAATTCTCCCCCGTCCGGACCAGCATCCAGTATCTGCGTAAAAACTCCACTTTCAAAGTCTGTACATGAAACTGCGACGCTGTCGCCATCCAAGGACGTTTAAGTATAAAGACTCACAGCTAGAGACCAAATATATGCGATCGTCTCGGAACAGAGTTAACAACACGATGCATTCTGCTGCACCCCAAGCAGGCACAAACTAGGGTGACTTTGCACTATATTCCGTTACTTGTGTTACCTATAAATTGTACAGTATGTATTGTATATACAGACCTTAGCAGCTCAATCCTGCATCTATGCATTAAATACATATATAGGGTCTAGGTTGTTTGTAGAGAGAACAGCATGAAGGGTGGAGATTCACAAGTACTACTCACATATACCTTTATATAATCATGGTTAAGTATGTAAGATTACACATGCCATGCATGTGCGACAGAAAAAGCAAGTCCTGCAGCCAGATACTGTACATACTGTATAAAGCCAGTACTGACATTACCAAAGATGGATAGGAGTCTGCCATTTCCTCAACTTTATCGACTGAATTTGCACTATTGTGTTTTGCTGTTCCCTGGGTCTCAAGCAATTTCTTCTGAAACTGACTGAACTCATTCTGGGACGTATTGTAGTACATCAGGAAGCTATGACCTGAAGGCGAATTTTATAAAATTTTACTGCTGTATATATCTATTTTTTTATAAACTAATAAAAATAAAAATCAAATTGACTATGAAAAAAAAAAAAAAAAAA	Refseq >NM_001090566\|Xenopus laevis homeobox D1 (hoxd1), mRNA CCGTCCAGAGGAGAAGACCAGGTGAAAGATTGAGGGATCAGCAGGTTCCTCAGCTGTCCGGCCAGAGAAGTCTCCCTAGAGATGAATTCCTACCTAGAATACACTTCTTGCGGGGATGTTTTAGCTTTTTCACCCAAGTTCTGCCGCAGCGACCACAGAAACATGAACTTGCAGCCTTACCCTAGAAGTGGAGCAGATCATTCCTTTATGCCAGTCGGGGGTGTGCCCGGATCAGTTGCCCACCAGGCTCCACACCAGTCTCCAGCACTTTATGCTCCTTGCAGCCTGGATGTCGCCTATGAGCCGACCCCACCTTCTGACTACAGTTTCTTGCACAGCAGCCCCGATTACGATTATTATGGATCTAATCACCAGATAGAAGAGACTGGGGGGCACATTCCCTATGGTAGCTCACTATTTCCAGGCAATGGATCTTACATCCTCAATGGGCAGCTGAGCTACAGCCCTCTTGGAGAAGAAACTCCAAATGGCCCAGGTGGTAAGGAACCACTAGAAGTTTATCCTGGGGGCAACTTGCAGAGTATCTCCCCCTTGCCTGGGACTTACCCAAAACCTGCCTCCCCGGCATCTGACAGCTATGTCAGCACGTTTGATTGGATGAAAGTTAAAAGGAACCCTCCTAAGAAGAGTATACCATCTGAATATGGGGTAACAAGTCCCCCCTGCAATGTGAGGACAAATTTCACCACCAAACAACTGACTGAGCTCGAAAAGGAGTTTCACTTTAACAAGTATCTCACAAGAGCAAGGCGCATCGAAATCGCAAACTCTCTGCAGCTCAACGATACCCAGGTTAAGATCTGGTTCCAGAACAGAAGAATGAAACAAAAGAAAAGGGAAAGGGAGGGAACTTTGCCCAACTCTCCCCCATCCGGACCCGCGTCTAACTTCTGCGTAAAACCTCCACATTTGAAGTCTGTAAATGAGACTGCGACACTGTCGCATCCAAGGACGCTTCACCCTAGAGACTCAAAGCAAGAAACCAAATATGTGGGATTGTCTGCTGCACCCCAAGCCAGCCAAAACTAAGGGGACTTTGGCCACTATAGTTCGTTACTTGCAGTATTCCCTATTGAATGTACAGTATCTATGTATATACAGACTTTAGAAGTGCATACTATATCTATGCATTAAATACAAATATAGGGTCTGGGTTGTTTATAGAGAGAACAACATGAAGGGTGGAGATTTACAAGTCCTCACATATATCTCTATATATTTCTGGTTCAGTATGTAAGATTACACATGCCATGTATGTGCAACAGAACAAAGTCCTGTAGCCAGACACCCATGTACTGCACATACTGTATAAAGTCACAACTGACATTACCAAAGATGGATAGGAGTCTGCCATCTCCTCAACTTTATCGACTGAATTTGCACTACTCGATTTTATGTTGCTGTTGTTCCCTGTGCCTCAAATCCATGCGGTTTCTCCTTCTGCAAAACTGACTGAACTCATTCTGGGACATACACTAGGAAGCTATTATTTTAAGGCGAATTTTATAAGATTTTACTGCTGTATATATCTATTTTTTTATAAACTAATAAAAATCCAATTTACTATG
Protein		Refseq >NP_001016678\|homeobox protein Hox-D1 [Xenopus (Silurana) tropicalis] MNSYLEYTSCGDVVAFSPKFCRSDQRNMTLQPYPGSGADHPFMPVGGVPGSVAHQASHQSPALYAPCSLDVAYEPPPPSDYSFLHSSTDYDYYGSNHLVEETGGHIPYGSSVFPGNGSYILNGQLSYRTLGEETQMAQIAQCKEPLEVYPGGNLQSISPSPGTYPKPASPASDTHVSTFDWMKVKRNPPKKSLQSEYGVASPPCTVRTNFTTKQLTELEKEFHFNKYLTRARRIEIANSLQLNDTQVKIWFQNRRMKQKKREREGSLPNSPPSGPASSICVKTPLSKSVHETATLSPSKDV UniProtKB	Refseq >NP_001084035\|homeobox protein Hox-D1 [Xenopus laevis] MNSYLEYTSCGDVLAFSPKFCRSDHRNMNLQPYPRSGADHSFMPVGGVPGSVAHQAPHQSPALYAPCSLDVAYEPTPPSDYSFLHSSPDYDYYGSNHQIEETGGHIPYGSSLFPGNGSYILNGQLSYSPLGEETPNGPGGKEPLEVYPGGNLQSISPLPGTYPKPASPASDSYVSTFDWMKVKRNPPKKSIPSEYGVTSPPCNVRTNFTTKQLTELEKEFHFNKYLTRARRIEIANSLQLNDTQVKIWFQNRRMKQKKREREGTLPNSPPSGPASNFCVKPPHLKSVNETATLSHPRTLHPRDSKQETKYVGLSAAPQASQN UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene		Str.10073	Xl.53491 [+] Xl.11612
Unigene EST Profile		EST Profile	EST Profile
GEO data			GEO
Images		48 expression image(s) for tropicalis and laevis

Phenotype		tropicalis	laevis
Smith Morpholino Screen		tneu039b14

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	HOXD1
mouse		MGI	Hoxd1	All(2) Targeted, other(1) Targeted, knock Out(1)
zebrafish

Publications
First:		Retinoic acid perturbs the expression of Xhox.lab genes and alters mesodermal determination in Xenopus laevis. [Genes Dev 1991]
Most recent:		Transient expression of Ngn3 in Xenopus endoderm promotes early and ectopic development of pancreatic beta and delta cells. [Genesis 2012]
		View All Papers 7 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		DNA binding transcription factor activity
Biological:		regulation of transcription, DNA-dependent
Cellular Component:		nucleus
EC:
KOG:		[R] Transcription factor zerknullt and related HOX domain proteins

Reagents		tropicalis	laevis
Clones		open biosystems	open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes
Affymetrix 1.0		Str.10073.1.S1_at	Xl.3370.1.S1_at
Affymetrix 2.0			Xl2.3370.1.S1_at [+] Xl2.11612.1.A1_at Xl2.53491.1.S1_at

Symbol legend[+]