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Summary Expression Gene Literature (126) GO Terms (18) Nucleotides (295) Proteins (36) Interactants (909) Wiki
XB-GENEPAGE- 484294

Gene Symbol: sox17a

Gene Name: SRY-box 17 alpha

Synonyms: xSox17alpha1 , xSox17alpha2 , tSox17alpha , Xsox17-alpha , Sox17alpha , sox17-alpha , xsox17a , xsox17 , Xsox17alpha , sox17 alpha
Add Xenopus synonyms , Nomenclature history

Gene Function: HMG-box transcription factor

Protein Function:
Transcription activator. Binds to the DNA sequence 5'-AACAAT-3'. All of the sox17 proteins are required for embryonic endoderm development and gastrulation movements, and show some redundancy in functi...[+]


Interactants: YYY

OMIM Disease Associations:
1/5
 
Xenbase Gene ID XB-GENE-484295 XB-GENE-865067 XB-GENE-6255435
Gene Symbol sox17a sox17a.L sox17a.S
Chromosome scaffold_6 chr6L chr6S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0
Entrez Gene
Entrez Gene
Entrez Gene
mRNA Refseq Refseq Refseq
Protein Refseq Swiss-Prot Refseq Swiss-Prot Refseq Swiss-Prot
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v7.1 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.114 [+] Xl.3831 Xl.11957
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Images 82 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine sox17a sox17a.L sox17a.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards SOX17 OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Sox17 MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN sox17 ZFIN Ensembl
chicken
GEISHA SOX17 Ensembl
fruit fly
worm
WORMBASE
Publications
First: Xsox17alpha and -beta mediate endoderm formation in Xenopus. [Cell 1997]
Most recent: Conservatism and variability of gene expression profiles among homeologous transcription factors in Xenopus laevis. [Dev Biol 2017]
View All Papers 38 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 12 terms 14 terms 11 terms
EC
PANTHER sox17a
KEGG Pathways K04495 K04495 K04495
KOG [K] HMG-box transcription factor
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones   EXRC - 1 clone(s)  
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience Source BioScience Source BioScience
Antibody Sox17a Ab1 Sox17a Ab1 Sox17a Ab1
Morpholino sox17a MO1 , sox17a MO2 , sox17a MO3 , sox17a MO4 sox17a MO1 , sox17a MO2 , sox17a MO3 , sox17a MO4 sox17a MO1 , sox17a MO2 , sox17a MO3 , sox17a MO4
ORF sox17a ORF2 sox17a ORF1
Affymetrix 1.0 Str.114.1.S1_at Xl.3831.1.S1_at Xl.11957.1.S1_at
Affymetrix 2.0 Xl2.3831.1.S1_at Xl2.11957.1.S1_at

Symbol legend[+]

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