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Summary Expression Gene Literature (67) GO Terms (2) Nucleotides (136) Proteins (34) Interactants (690) Wiki
XB-GENEPAGE-484864

Gene Symbol: sox17b.1

Gene Name: SRY (sex determining region Y)-box 17 beta, gene 1

Synonyms: Xsox17-beta , sox17-beta , tSox17beta , Sox17beta , sox17 , Xsox17 ( Add synonyms , Nomenclature history )

Gene Function: HMG-box transcription factor

Protein Function :
Transcription activator. Doesn't appear to bind to the consensus 5'-AACAAT-3' DNA binding site, but binds 5'-ATTGTT-3'. All of the sox17 proteins are required for embryonic endoderm development and gas...[+]

Interactants: Loading ...
Disease Ontology:

OMIM Diseases: VESICOURETERAL REFLUX 3; VUR3

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Xenbase Gene ID XB-GENE-484865 XB-GENE-865510 XB-GENE-6252148
Gene Symbol sox17b.1 sox17b.1.L sox17b.1.S
Chromosome Chr06 chr6L chr6S
Molecules tropicalis laevis.L laevis.S
Gene Genomic sequence Genomic sequence Genomic sequence
CDS Gene model
Entrez Gene
Entrez Gene
Entrez Gene
mRNA RefSeq RefSeq RefSeq
Protein RefSeq TrEMBL Swiss-Prot RefSeq TrEMBL Swiss-Prot RefSeq TrEMBL Swiss-Prot
Genomic tropicalis laevis.L laevis.S
Genome Browser
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics tropicalis laevis.L laevis.S
Embryonic Protein Expression
Data Mining tropicalis laevis.L laevis.S
XenMine sox17b.1 sox17b.1.L sox17b.1.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards SOX17 OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI, IMPC Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN
chicken
fruit fly
worm
WORMBASE
Publications
First Mixer, a homeobox gene required for endoderm development., Science 1998  
Most Recent Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Cell Rep 2019                            
All View All Papers 14 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 2 terms 2 terms 2 terms
PANTHER sox17b.1
KEGG Pathways K04495 K04495
KOG [K] HMG-box transcription factor
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones EXRC - 1 clone(s)    
Dharmacon Dharmacon Dharmacon
Morpholino sox17b.1 MO1 sox17b.1 MO1 sox17b.1 MO1
ORF sox17b.1.S ORF1
Affymetrix 1.0 Str.7017.1.S1_at Xl.44.1.S1_s_at [+]
Affymetrix 2.0 Xl2.47412.1.S1_at Xl2.44.1.S1_at

Symbol legend: - Blast this sequence    - View this sequence       - Literature or expression images  
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