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Summary Expression Gene Literature (67) GO Terms (19) Nucleotides (136) Proteins (40) Interactants (688) Wiki
XB-GENEPAGE-484864
Gene Symbol: sox17b.1

Gene Name: SRY (sex determining region Y)-box 17 beta, gene 1

Synonyms: Xsox17-beta , sox17-beta , tSox17beta , Sox17beta , sox17 , Xsox17 ( Add synonyms , Nomenclature history )

Gene Function: HMG-box transcription factor

Protein Function :
Transcription activator. Doesn't appear to bind to the consensus 5'-AACAAT-3' DNA binding site, but binds 5'-ATTGTT-3'. All of the sox17 proteins are required for embryonic endoderm development and gas...[+]

Interactants: Loading ...
Diseases:  OMIM: VESICOURETERAL REFLUX 3; VUR3

External Disease Links: ClinVar, MalaCards, KEGG Disease, DECIPHER
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Xenbase Gene ID XB-GENE-484865 XB-GENE-865510 XB-GENE-6252148
Gene Symbol sox17b.1 sox17b.1.L sox17b.1.S
Chromosome Chr06 chr6L chr6S
Molecules tropicalis laevis.L laevis.S
Genomic Sequence Version 9.1 Version 9.2 Version 9.2
CDS Gene model Gene model Gene model
Entrez Gene 394440
100049782
397967
mRNA RefSeq RefSeq RefSeq
Protein RefSeq TrEMBL TrEMBL Swiss-Prot RefSeq Swiss-Prot TrEMBL RefSeq Swiss-Prot TrEMBL
Genomic tropicalis laevis.L laevis.S
Genome Browser
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Data Mining tropicalis laevis.L laevis.S
XenMine sox17b.1 sox17b.1.L sox17b.1.S
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards SOX17 OMIM Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI, IMPC Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN
chicken
fruit fly
worm
WORMBASE
Publications
First Mixer, a homeobox gene required for endoderm development., Science 1998  
Most Recent Endodermal Maternal Transcription Factors Establish Super-Enhancers during Zygotic Genome Activation., Cell Rep 2019                            
All View All Papers 14 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 13 terms 4 terms 12 terms
PANTHER sox17b.1
KEGG Pathways K04495 K04495
KOG [K] HMG-box transcription factor
Reagents tropicalis laevis.L laevis.S
CRISPRscan Tracks sox17b.1
Morpholinos sox17b.1 MO1 sox17b.1 MO1 sox17b.1 MO1
ORFs sox17b.1.S ORF1
Clones EXRC Horizon Source BioScience Horizon Source BioScience Horizon Source BioScience

Symbol legend: - Blast this sequence    - View this sequence       - Literature or expression images  
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Version: 4.13.0


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