nr2f5 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (10)

Nucleotides (75)

Interactants (37)

XB-GENEPAGE-486333

Gene Symbol: nr2f5 Gene Name: nuclear receptor subfamily 2, group F, member 5 Synonyms: coup, xCOUP-TFa, xCOUPTFa, COUP-TFa, COUPTFa Add Xenopus synonyms Gene Function: hormone receptor Interactants: nr2f2(4) , ephb4(2) , notch1(2) , nrp1(2) , prox1(2) , act3(1) , acta1(1) View All

XB-GENE-486334

XB-GENE-865600

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		NCBI Nucleotide >XM_002938463\|PREDICTED: Xenopus (Silurana) tropicalis nuclear receptor subfamily 2 group F member 5-like (LOC100491959), mRNA CCAGTGCCTTCCACACCAGCAAAGGAACATCTCTTACTAGTGACTGCAAGGGGTGGGGGAAAAGGGGGCTGGGATTTGGAAAGAGGCAAAAATCTGTGTCACTTTCAAAAGTTTCTCCCCCTCTCATTTGTGTGGGCTGCAAGCTGCAAGGCTGCCTTCAGAAAAGGAGGAAAAAAATCAGGATTCGCACACACATGGGCATTTCTAAATGAAGGAGCGAATCTGAAATCTGAAATTTGCCATTGCGGAATCAAGAAGGAAAAAAAAAAACGTCCAGGTTGCAAACAGGTTTCTTTTTCCCAGAAGTGTATGTATCCCAGCAGCTACCGCACACTGTGCTCCATATAAATATAGATTGATAGATTTAGACACACATGGACATTTGTGTGTTGGGTGCATGACTTTGCCACCCCCTCCCTCTGCTGTTGGAAGGAGGATCTAAAGGCACATTCACGTCTTCCTGTTTTCCTGGAGAGGTTTTTTTGGACTCTGGACACGCTTTGGGGAAGCCTGCTTTGGGACGGCAGAGGATATTTTGCTAAACCAGCGAGACAGAGCCGGCAGAGCAAACCAGTGACTCTTTTGCACTGAACTTTGTAACTTGTGCAGCAGCTTTGTGCATTGATTGTGTCTTCTGCGCCGTCGTTTGCTTCCTGGAGCATTCTGTCTTCTGCACTGTATTATGGCCATGGTGGTTAACCCTTGGCAGGAGGACATTCCTGGTGTGCCAGGGTCTCAGGTGAACAACCCACCAGGGCTCTGCAATCAAGATCCAGGGGGTACCCCTCAAACGCCCACCACCCCGAAAGGAGGTGTCCCTGGTCAGGATCCTGTTCATTCTGGGGATAAAGGCGTACCGAATGTGGACTGCTTGGTGTGTGGGGACAAGTCAAGTGGGAAACACTATGGACAGTTCACCTGTGAAGGGTGCAAGAGTTTCTTTAAGAGGTCAGTGAGGAGGAACCTGACCTACACGTGTAGGGGCAACAGAGACTGTCCTATAGATCAGCATCACCGTAATCAGTGCCAGTACTGCCGCCTGAAGAAGTGTCTCAAAGTTGGCATGAGAAGGGAAGCAGTCCAGCGCGGTCGGATGTCTCACCCACAAACCAGCCCAGGCCAGTATACTCTGAACAACGTTGACCCTTACAATGGGCACTCGTACCTAACGGGATTCATCTCCTTGCTTCTCCGAGCTGAGCCATACCCGACCTCACGGTATGGAGCCCAGTGCCTACAGCCGAACAACATCATGGGCATCGAAAACATCTGCGAGTTGGCGGCCCGCCTACTCTTCAGCGCTATTGAGTGGGCCAAGAACATTCCTTTCTTTCCTGACTTCCAGCTCTCTGACCAAGTGTCCCTCCTCCGTATGACGTGGAGTGAGCTGTTTGTTCTTAATGCAGCACAGTGCTCCATGCCCCTCCATGTGGCGCCCCTGTTGGCAGCCGCTGGCCTCCATGCATCGCCAATGTCTGCCGACCGTGTGGTGGCCTTTATGGACCATATTCGAGTCTTTCAGGAGCAGGTGGAAAAGCTGAAGGCACTTCACGTTGACTCTGCAGAATACTCCTGTTTGAAAGCCATAGCCTTGTTTACACCTGATGCAGTGGGACTATCAGACATTGGCCACGTGGAAAGCATTCAAGAGAAATCCCAGTGTGCCCTGGAAGAGTACGTCCGAAACCAGTACCCAAACCAGCCAACGCGGTTTGGGAGGCTTTTGCTCCGCCTTCCTTCTTTGCGCATCGTCTCCGCTCCTGTCATAGAGCAACTTTTCTTTGTGCGCTTGGTTGGCAAGACCCCCATTGAGACTTTAATCCGAGATATGCTCCTGTCTGGGTCCAGCTTTAATTGGCCCTATATGCCTATGCAGTGATGGGGCTCGTAGTGCTCCTCAGACTTCTAACACCCCATTCAAAGTAGAAGAAGCCTTTATCGTCATGAAAAAACAAAGTTTTCCACCATGGCCAGACAACTAAAATGATGCTCAAACAGGGTGGGGGAGCCATTGTCTCCAAGCTTCAAATCCAGGGCATTCGATGATGGGACATTGCTTTCATGGACGGATTGTGGCTTCCTCTGAAGTTATATTTTCCTACTTGCTGTCAAGGTAACAAAGGTCAAAGATCTGGCAATGAATAAATGTTGCCTATCATGACTGAGACCTCACCGATATTGGAATGAGTGAGGACTTTTGGCCATATGATAGACGTATGTTCATGGCACATCTCT	Refseq >NM_001101759\|Xenopus laevis nuclear receptor subfamily 2, group F, member 5 (nr2f5), mRNA GTTGTGCAGCTCCGTGCATTGATTCTACTTGCTCTACTGCTTCCTGGAGCATTCTGTCTGCTGCACTGTATTATGGCCATGGTGGTTAACCCTTGGCAGGAGGACATTCCTGGTGTTCCAGGATCTCAGATGAACAACCCACCGGGGCTCTGCAATCAAGATCCAGGGGGTACCCCTCAAACACCCACCACCCCAAAAGGAGGTATCCCTGGTCAGGATCCTGTTCATTCTGGAGATAAAGGGGTACCTAATGTAGACTGCTTGGTGTGTGGGGACAAGTCAAGTGGCAAACACTATGGACAGTTCACCTGTGAAGGGTGCAAGAGTTTCTTTAAGAGGTCGGTGAGGAGGAACCTAACCTACACATGTAGGAGCAACAGAGACTGTCCTATAGATCAACATCACCGCAATCAGTGCCAGTACTGCCGCCTGAAGAAGTGTCTCAAAGTTGGGATGAGAAGAGAAGTGCAGCGCGGACGGATGTCTCATCCACAAACCAGCCCGGGCCAGTATACTCTCAACAACGTTGACCCCTACAATGGGCATTCATACCTAACGGGATTCATCTCCTTGCTTCTCCGAGCAGAACCATACCCGACCTCTCGGTACGGGGCACAGTGCCTCCAGCCGAACAACATCATGGGCATTGAGAACATCTGCGAGTTGGCGGCCCGCCTGCTCTTCAGTGCCATTGAGTGGGCCAAGAACATTCCTTTCTTCCCTGACTTCCAGCTCTCTGACCAAGTGTCCCTGCTCCGTATGACATGGAGTGAGCTGTTTGTTCTTAATGCAGCGCAGTGCTCCATGCCCCTCCATGTGGCCCCACTGTTGGCACGCGCTGGCCTCCATGCATCACCGATGTCCGCTGACCGGGTGGTGGCCTTTATGGACCATATTCGAATCTTTCAGGAGCAGGTGGAAAAGCTGAAGGCACTACATGTAGACTCTGCAGAATATTCCTGTTTGAAAGCCATAGCTTTGTTTACACCTGATGCGGTGGGACTATCAGACATTGGCCACGTGGAAAGCATTCAAGAGAAATCCCAGTGTGCCCTGGAAGAGTACGTCCGAAACCAGTACCCAAACCAACCAACACGGTTTGGGAGGCTTTTGCTCCGCCTTCCTTCGTTACGAATTGTCTCCGCTCCTGTTATAGAGCAACTTTTCTTTGTCCGCCTTGTCGGCAAGACCCCAATCGAGACTTTAATTCGAGATATGCTCCTGTCTGGGTCCAGCTTTAATTGGCCCTACATGCCTATGCAGTGATGGGGCTCATAGTGCTCTCAGACATCTAACACCCAATCAAAAGGAACCAGAAGAACATTATGTCATGAAAGAACTTCACATGCAGATGACTACATATGCTCAACAGGTGCATGTCAGTCAATACAGGCATTCATGAGACATCGC
Protein		NCBI Protein >XP_002938509\|PREDICTED: nuclear receptor subfamily 2 group F member 5-like [Xenopus (Silurana) tropicalis] MAMVVNPWQEDIPGVPGSQVNNPPGLCNQDPGGTPQTPTTPKGGVPGQDPVHSGDKGVPNVDCLVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRGNRDCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMSHPQTSPGQYTLNNVDPYNGHSYLTGFISLLLRAEPYPTSRYGAQCLQPNNIMGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRVFQEQVEKLKALHVDSAEYSCLKAIALFTPDAVGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMPMQ	Refseq >NP_001095229\|nuclear receptor subfamily 2, group F, member 5 [Xenopus laevis] MAMVVNPWQEDIPGVPGSQMNNPPGLCNQDPGGTPQTPTTPKGGIPGQDPVHSGDKGVPNVDCLVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRSNRDCPIDQHHRNQCQYCRLKKCLKVGMRREVQRGRMSHPQTSPGQYTLNNVDPYNGHSYLTGFISLLLRAEPYPTSRYGAQCLQPNNIMGIENICELAARLLFSAIEWAKNIPFFPDFQLSDQVSLLRMTWSELFVLNAAQCSMPLHVAPLLARAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIALFTPDAVGLSDIGHVESIQEKSQCALEEYVRNQYPNQPTRFGRLLLRLPSLRIVSAPVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMPMQ

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis
UniGene			Xl.1157 [+] Xl.13423
Unigene EST Profile			EST Profile
GEO data			GEO
Images		4 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human
mouse
zebrafish		ZFIN	nr2f5	1 Lines(s)

Publications
First:		Cloning and sequencing of a COUP transcription factor gene expressed in Xenopus embryos. [Biochim Biophys Acta 1992]
Most recent:		xCOUP-TF-B regulates xCyp26 transcription and modulates retinoic acid signaling for anterior neural patterning in Xenopus. [Int J Dev Biol 2012]
		View All Papers

Functional Ontologies
GO: Molecular:		DNA binding ligand-dependent nuclear receptor activity steroid hormone receptor activity More[+] transcription factor activity
Biological:		regulation of transcription, DNA-dependent
Cellular Component:		nucleus
EC:
KOG:		[T] FOG: Hormone receptors

Reagents		tropicalis	laevis
Clones			EXRC - 1 clone(s)
			open biosystems
			geneservice/RZPD imagenes
Affymetrix 1.0		Str.10374.3.S1_a_at	Xl.1157.1.S1_at [+] Xl.13423.2.A1_at Xl.20537.1.S1_at Xl.13423.1.S1_at
Affymetrix 2.0			Xl2.1157.1.S1_at [+] Xl2.53794.1.S1_at Xl2.13423.1.A1_at Xl2.20537.1.S1_at

Symbol legend[+]