Gene Symbol: pax7 Gene Name: paired box 7 Synonyms: pax-7 Add Xenopus synonyms Gene Function: paired box transcription factor with homeodomain Interactants: myf5(8) , pax3(8) , myod1(6) , msx1(5) , snai2(4) , bmp4(3) , dlx5(3) View All

Molecules		tropicalis	laevis
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		NCBI Nucleotide >XM_002942189|PREDICTED: Xenopus (Silurana) tropicalis paired box protein Pax-7-like, transcript variant 1 (LOC100496502), mRNA ATGGCTGCACTGCCAGGCACCGTACCAAGGATGATGCGACCTGCCCCAGGGCAGAACTACCCCCGTACCGGATTCCCTTTGGAAGTATCTACCCCCCTGGGGCAGGGGCGAGTCAACCAGCTAGGGGGGGTATTTATCAATGGCCGGCCCTTGCCCAACCACATTCGCCATAAGATCGTGGAGATGGCCCATCATGGCATCCGACCCTGCGTCATTTCCCGCCAACTGAGAGTCTCCCACGGGTGCGTGTCCAAAATCCTGTGCCGGTACCAGGAGACCGGATCCATCCGACCCGGGGCCATCGGGGGCAGCAAACCCAGGGTGGCCACCCCGGACGTAGAGAAGAAGATCGAGGAGTACAAGCGGGAGAACCCCGGGATGTTCAGCTGGGAGATACGGGACCGGCTGCTCAAGGATGGGCACTGCGACCGGAGCTCTGTCCCCTCAGGTTTAGTGAGTTCGATTAGCCGAGTCCTGAGAATCAAGTTTGGGAAGAAGGAGGAAGACGACGATTGTGACAAAAAGGAGGAAGATGGGGAGAAAAAGGCCAAGCACAGTATCGACGGCATCTTGGGGGACAAAGGGAACCGTATAGATGAGGGGTCCGATGTGGAATCAGAACCAGACCTCCCATTAAAGCGCAAACAGCGGCGCAGCCGTACCACCTTCACAGCGGAGCAGCTGGAGGAACTGGAGAAAGCTTTTGAAAGGACACATTATCCGGACATCTACACCCGGGAGGAACTGGCCCAGAGAACCAAACTTACAGAGGCGCGTGTCCAGGTCTGGTTCAGCAACCGCAGGGCACGTTGGCGCAAACAGGCAGGAGCCAATCAGCTAGCAGCATTTAACCACTTGCTCCCTGGAGGTTTCCCTCCCACTGGGATGCCAGCACTGCCTCCCTATCAGCTCCCGGAGTCATCCTACTCGGCAGCGAGCCTCGGCCAAGATGGAGGAAGCACAGTTCATAGGCCCCAACCTCTACCTCCCTCTTCCATGCACCAGGGAGGCCTTTCCGCCGCAACTGCCGACGCGGGTTCCGCCTACGGCGCCAGGCACAGCTTCTCCAGCTACTCAGACAGTTTTATCAACCCAGGAGGGCCTTCCAATCACATGAACCCCGTCAGTAATGGGCTTTCCCCGCAGGTTATGAGCATCCTAAGTAGCCCCGGTGGGGTTGGACATCAGTCCCAGTCCGATTTCTCCATCTCTCCCCTGCACAGTGGACTGGAAACCAGTAACTCCCTCTCTGCCAGTTGCAGCCAGCGCAGCGACTCCATTAAGTCTGTCGACAGCCTGTCTACCTCCCAGTCCTACTGTGCCCCCACCTACAGCACGACTGGCTACAGCATGGACCCCGTTGCCAGCTATCAGTACGGGCAGTATGGCCAAACCGCCGTTGATTACCTGGCGAAAAATGTCAGTTTGTCTACGCAGCGCAGGATGAAACTCGGGGACCACTCGGCAGTACTAGGTCTGTTACCCGTGGAGACCGGCCAGGCCTACTGA	Refseq >NM_001095526|Xenopus laevis paired box 7 (pax7), mRNA GCACGAGGCTGGTCCTTGGGTCGCACTTGAGCATCTTTCTTGCTTCTCCTGCTGACCACGCAGAAGGTTTCTCATACCAACTTGTGAGGACTCTTCTAGGCTCCCTTTGTTGATCCAAACAGAACCTTCTCCTGGTTTAAGAGTTGGAGGCAGCACAGACTGAGGAAGGCAGTTTCTTTGTGATTTGCCCCCTCCTTCTTTGGGTTTTGTTGAGTTGCACCAAGAGTAGGTGTCTTGTTCTTCTTCTACTGCCCAGTTGGGTGTGATGGCTGCTCTGCCCGGTACCATACCAAGGATGATGCGACCTGCCCCAGGACAGAACTATCCTCGCACAGGATTCCCTTTGGAAGTATCTACCCCCCTTGGACAGGGGCGAGTGAACCAGCTGGGAGGGGTATTTATTAATGGCAGGCCCCTGCCCAACCACATTCGTCATAAGATCGTGGAGATGGCCCATCATGGGATCCGACCCTGCGTCATTTCCCGCCAGCTAAGAGTTTCCCACGGGTGTGTGTCCAAAATCCTGTGCAGGTACCAGGAGACTGGATCCATCCGGCCTGGGGCCATCGGGGGCAGCAAACCCAGGGTGGCCACCCCTGATGTGGAGAAGAAGATTGAGGAATACAAGCGGGAAAACCCCGGAATGTTCAGTTGGGAGATTCGGGACCGGCTGCTCAAGGATGGCCACTGCGACCGTAGCTCTGTCCCCTCAGGTTTAGTGAGTTCGATTAGCCGAGTCCTGAGAATCAAGTTTGGGAAGAAGGAGGAAGATGACGATTGTGACAAAAAGGAGGAAGATGGGGAGAAAAAGGCCAAGCACAGTATTGACGGAATCCTGGGGGACAAAGGAAACCGTATTGACGAGGGGTCGGATGTGGAATCAGAACCAGACCTGCCATTAAAACGCAAGCAACGACGCAGCCGTACAACATTCACAGCAGAGCAGCTGGAGGAACTGGAGAAAGCCTTTGAGAGGACACATTATCCTGACATTTACACCCGGGAAGAACTGGCACAGAGAACCAAACTTACCGAGGCCCGTGTCCAGGTCTGGTTCAGCAACCGCAGGGCACGTTGGCGCAAACAGGCAGGAGCCAATCAACTCGCAGCATTTAACCACCTGCTCCCTGGAGGGTTCCCTCCCACTGGGATGCCGGCGCTGCCTCACTATCAGCTCCCAGACTCCTCCTACTCCGCAGCCAGCCTTGGCCAAGATGTCGGAAGTACAGTTCATAGACCCCAACCTCTGCCTCCCTCTTCAATGCACCAGGGAGGCCTTTCAGCTGCTGACACAGGTTCTGCCTATGGTGCCAGACACAGCTTCTCCAGCTACTCCGACACTTTCATCAACCCAGGAGGACCGTCCAATCACATGAACCCCGTCAATAATGGTCTCTCCCCGCAGGTTATGAGCATCTTAAATAGTCCCGGTGGGGTTGGACCTCAGTCCCAGTCCGATTTCTCCATCTCTCCTCTGCACGGTGGACTGGAAACCAGTAACTCTCTCTCTGCCAGTTGCAGTCAGCGCAGTGACTCCATTAAGTCTGTAGACAGTTTGTCCACCTCTCAGTCCTACTGTGCCCCCACTTACAGCTCAAGCGGCTACAGCATGGACCCCGTGGCTAGTTATCAGTATGGCCAGTATGGACAAACCGCTGTTGATTACCTGGCAAAAAATGTCAGCTTGTCAACACAGCGCCGGATGAAACTTGGGGACCATTCAGCCGTATTAGGTCTTTTACCCGTGGAGACCGGCCAAGCCTACTAAAGCAAAGCCATGATAGTAACTTGCACCAGAATCCTCTGAGAATCAGAGCAGCTTCTACATCTTCTGAGACCTGTCCATTGCTTCATCTCCTGCTTCAGGACAACAACATCAAGGTGCTTCTCCACTAACCACCTCCTAACTCCCTGCCATGTCAGTCAACTGGCGGTTCTTCCCAGGAGTCATTTCCTGCACTTTTATTTTTAAAAAAATTTAAAATATTATGACAAATGTCTGCCACTTGGTGAAAAACTGAAACAGTCAAGTTTTGGGAGGACCAACTCTTGATATTGATCTCCCAAGACGATAAGCTCTGGGTAATAGAAGGAAAAAAAACGATTTTATTTCTTCGCCGGCATTTTTCTTTTCTTTCTCGATTTGCCTGTAACAAAAAAAAAGAAGAAAGAAATCGACAGCCTATTTTGGAGTAACGTTAAAGGACCAATGAAGACTTCAGATATGACTTTGCATCCTTGTATTCGCTGTGGATTTTGTGCTGGAAATTACAGTTCAGTGGATATTTATGCAACAATTGTGATGGAAAACAATGGACCTTTGCGAAAATGATTGAAATTTGGAAAACTCAATTTCTGCAAAATTTGCAGATTTAGAAGCACGTTATCTACTATAGGTAACATTAAATGCAACTTCTTTGTGTATAATGATGGCACTGTTTCATGAGCATAAAGTAAGTGTTTTTTGGGGCTGATTGCGTCCCACTTTAAATGTGTGATACAAATGAATAGAAAACGTTTGCAGGGAGAAATATTGGGCTTCAGCCTATAGAGACTTTGCACAAGGTATCCATGTGATCTTATTGTTGGTTTTGACATGGGTTCAAGCACGTCTGTGTAGGTTTCCAAATCCTGCGCTTTCCTCCAAGGACCACAAGAATATTCGCTGATTCTTAGGACCAATACCAATTTCCAGAAATTTTTAACAAGAGCTCACTTTTCTTCAGTTTGATTGCTAAATATTTGAAATTGTGTCTTGTAGCTGACTGTCCCCTCCCAGGTCGGGAAGCTTGGGCTTGCCAAATGGTCCAAAGAGGTCCATCAAAAAACAAAAAAACAGAGACAAAAGCCGGACTGTGACCAAATGGGCCCCGAAAATCATAGAAATAGTAGTATTATAGGGCACAAATGTATATGTTCACGAAATTGTTAAAGCGCGGCCAACTTTAAAAATGATGTAAATAAGGACGTTGTTATTCCCTTCTATGTGAAAGAAACTCCTAAATCATTCCAGTGAGAAGATTTCGTTTTGAGTTTTCTTGTGGACCGTAATATTGACCGGATGTTTTAGTAAGGTTCCTGTAAACTAATTGAGTGGTGTCGTCTGAAAATTTATATATCAAAATCCCAAATTAAAAAAAAATAAATAAAAAAAAAGTCTATTTAAAATAATGTTACAGAGAAAGCTAAGGGTGAAGAAGCACAATCGATTCCGAAAAATAACCCCAGCTTTGGTTGATTGTATTGGAGAGAGATGGGCTGAAACGTTAAGCTATTTGGAGCATAAGTGAGTATGGTGACGTTAAATAGCATTCCATCAGTGGCGTAACTACCAGGGGTGCAGAGGGTGTGATGGCACCTGGGCCCGCACCCTCTTGGGGCCCACCGGGGCCACGATTATGGATATCGTGGGTGGTTGGGCAGGGGGAGATTTTACAGAGCACGCGATTCATAGGGGGGAGGGCCCGACACCAGGGCCTGCCGATGAGTAGTTACGCCACTGCATTCCATCAACATATTCCTGAAGAATCCCACTATAATCTCATGGATATATGGACATTATGCCTTTTTTATACTTCTGCAAAAAACAACTCTGTTGAATGTAGATCCGGGACTTCTATGTATTTTACTTCTAACATGGACTTGCTTGTTCTAATCTACATCCCAGGAGCCACGTAACTAGTTCTAGATAACATTCCATCCACTGCCCCTGTATCTGACTCACAGCTACCTTGCTTCACATGTGTAAATATATATATATACATATATATAATCCTGCTATAATTTATTCAGCTATATTATGTGGTAGAGTAGGAAGATAAATCAATACTTGTTTTATCGTGTCTGTGCTAGCAGATGTTTGCATTGCGCTGATGACCAGCAGCGGGGGGTCTACCTGCCGCCTGTATGTGTTTTCTGTGCACCTCAGGCATTCCTGTTATATATTAAAGAAGAATCAATTCTAACCGGCAAAAAAAAAAAAAAAAA
Protein		NCBI Protein >XP_002942235|PREDICTED: paired box protein Pax-7-like isoform 1 [Xenopus (Silurana) tropicalis] MAALPGTVPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSSVPSGLVSSISRVLRIKFGKKEEDDDCDKKEEDGEKKAKHSIDGILGDKGNRIDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPALPPYQLPESSYSAASLGQDGGSTVHRPQPLPPSSMHQGGLSAATADAGSAYGARHSFSSYSDSFINPGGPSNHMNPVSNGLSPQVMSILSSPGGVGHQSQSDFSISPLHSGLETSNSLSASCSQRSDSIKSVDSLSTSQSYCAPTYSTTGYSMDPVASYQYGQYGQTAVDYLAKNVSLSTQRRMKLGDHSAVLGLLPVETGQAY	Refseq >NP_001088995|paired box 7 [Xenopus laevis] MAALPGTIPRMMRPAPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAHHGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRVATPDVEKKIEEYKRENPGMFSWEIRDRLLKDGHCDRSSVPSGLVSSISRVLRIKFGKKEEDDDCDKKEEDGEKKAKHSIDGILGDKGNRIDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPALPHYQLPDSSYSAASLGQDVGSTVHRPQPLPPSSMHQGGLSAADTGSAYGARHSFSSYSDTFINPGGPSNHMNPVNNGLSPQVMSILNSPGGVGPQSQSDFSISPLHGGLETSNSLSASCSQRSDSIKSVDSLSTSQSYCAPTYSSSGYSMDPVASYQYGQYGQTAVDYLAKNVSLSTQRRMKLGDHSAVLGLLPVETGQAY

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase
Synteny		Metazome

Expression		tropicalis	laevis
UniGene			Xl.12816 [+] Xl.15854
Unigene EST Profile			EST Profile
GEO data			GEO
Images		24 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	PAX7	OMIM:268220
mouse		MGI	Pax7	All(15) Targeted, knock Out(3) Targeted, other(8)
zebrafish		ZFIN ZFIN	pax7a pax7b	1 Lines(s)

Publications
First:		Synergism between Pax-8 and lim-1 in embryonic kidney development. [Dev Biol 1999]
Most recent:		Induction of the neural crest state: control of stem cell attributes by gene regulatory, post-transcriptional and epigenetic interactions. [Dev Biol 2012]
		View All Papers 1 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		DNA binding transcription factor activity
Biological:		regulation of transcription, DNA-dependent
Cellular Component:		nucleus
EC:
KOG:		[K] Transcription factor PRD and related proteins, contain PAX and HOX domains

Reagents		tropicalis	laevis
Clones			open biosystems
			geneservice/RZPD imagenes
Affymetrix 1.0		StrEns.9611.1.S1_at
Affymetrix 2.0			Xl2.12816.1.S1_at [+] Xl2.15854.1.S1_at

Symbol legend[+]

- Blast this sequence
   - Literature Or Expression Images