snai2 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (168)

Nucleotides (120)

Interactants (460)

XB-GENEPAGE-487370

Gene Symbol: snai2 Gene Name: snail homolog 2 Synonyms: xslug, xSlu, slug, Snail2, XSnail2 Add Xenopus synonyms Gene Function: zinc finger transcriptional repressor Interactants: sox2(57) , snai1(51) , twist1(48) , pax3(34) , foxd3(33) , sox9(33) , chrd(32) View All	1/4

XB-GENE-487371

XB-GENE-6255814

XB-GENE-865699

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_204093\|Xenopus (Silurana) tropicalis snail homolog 2 (snai2), mRNA GCTGCCACTTGGTGAATGGACTCGGTGCGCACACGATGCGACAGGGATCAGCTTGAGGCCGGGGAGGAAACTAAAGTCGCTCCTTGTGGGACCGTTACTTTGCCAGGCTTGGGCACCGGCACTCCTCTCTCCCGCACTGAAAATGCCACGATCTTTTCTGGTCAAGAAACACTTCAACTCGGCCAAAAAGCCCAATTACGGGGAGTTGGACAACCATACAGTGATCATCTCCCCATTCCTGTATGAGCGGTACCCTGTGTCTGTGCTACCCCAGCCTGAACTCTACAGCTCGGTGGCCTACAGCCCCATCACCGTGTGGACAGGACTGCTTCACCCACCACTGCCCAGCGATCTCTCCCCTCTCTCAGGATACCCTTCATCTTTAGGACGGGTCAGCCCCCCTCCGCAGTCGGACACGTCGTCTAAAGACCACAGTGGCTCGGAGAGCCCCATCAGCGATGAGGAGGAAAGACTCCAAACCAAACTTTCCGACTCACATGCAATAGAGGCTGAGAAGTTCCAGTGCAGCTTATGCAGCAAGACCTACTCTACTTTCTCTGGGTTGGCTAAGCACAAGCAGCTGCATTGCGACGCCCAGTCTAGAAAATCGTTTAGCTGCAAGTACTGTGAAAAGGAGTATGTGAGCCTGGGCGCGCTGAAGATGCACATCAGGACACACACTTTACCCTGCGTCTGTAAAATCTGCGGCAAAGCTTTTTCTAGGCCATGGCTACTACAAGGGCACATCCGCACTCACACTGGAGAGAAGCCCTTCTCATGTCCACACTGCAACAGAGCATTTGCAGACAGATCCAACTTGCGAGCCCACCTGCAGACCCATTCTGATGTGAAGAAATATCAATGCAAGAACTGTTCCAAAACCTTCTCTAGAATGTCGCTCCTTCACAAGCATGAGGAATCTGGTTGTTGTGTAGCACATTAGACCGTCATATGTTTACCAGGACTTAACACATCCTTCAGGGTTTCTGGTGTAAAAGAAATTCCAAACATTTTTTTCTTACCTCTTTTTGTTCCTGTTAAAGGAAAGCCTATGCAAGATTCACCAAAAACACCAGAATTTCAGGTTCGATTTGCAGTATGGATTACAAATAATAGAAACACATTTCCATATGGCAGGAAGGATCAATGAAATGGTCTTTAGCGATGCCACATTTCCTTGACATGTATAAATCAGATGCATATGTAGAGAGCCTAGACAATCCAGCAACAATCCAAGCGACTTTCAGCTTCGTTCTCATGTGCTTTACTAAGTAGCCCATGAGATCCCTTCTTCCTGAATCGATATGACTCTTAAACTGTGCCATTCAGTGTATTGCCATTATTTTTAGCTAGGCTCCATCTGTGCCTTTGCCAGCCATTGCCTTCAGACATTCCTTGGTTTTATTTAAGACTTTTACAAATTTCACACAGTAGGATTTTTTTTAAATAAAATTTACAATTTTGTTCTCATGGGAATAAGTGCAACCGAGAGGGGTTTAAGTGAATGCCAAAATGTAGATCCTGAACTTTTCCTATGCACAAAAAAAAATGCAACTCATTTTCAGGATTCTCCACCCTTCATGTGCCTTTTTTTATAATAATTTGTAAAATATGTGAATATATTTTGAAATGTTTATATTTTTATATATGTGTGTGTGTGAATGTGGCGTGTGAAAGAGAGAAGCAGCAAGTTGCCAATTCAGGGATAACTTGAAATGATGTGCCAATTTGTTTTTCAGATGCATTTTTTAATAAACCCTTTCGATAAATTTT	Refseq >NM_001086282\|Xenopus laevis snail homolog 2 (snai2-a), mRNA GACTGCCACTTGCGCTCAGCGGTGAATGGACTGGGCGAGCACAAGATGCTATAAGGATCAGCTGGCGGGCGAGGACGAAACCATAATCGCTCCTCCTGGGGACCGTTACTTTAAGGGACCGTTACTTGTGCGTCCCTCCCGCACTGAAAATGCCACGATCTTTTCTGGTCAAGAAACACTTCAACTCGGCCAAAAAGCCCAATTATGGGGAGTTGGACAACCATACAGTGATCATCTCCCCATTCCTATATGAGAGGTATCCTGTGTCTGTGCTTCCCCAGCCTGACATCTACAGCTCAGTGGCCTACAGCCCAATCACTGTGTGGACAGGACTGCTTCACCCACCGCTGCCCAGTGATCTCTCCCCTCTCTCAGGATACCCTTCATCTTTAGGACGGGTCAGCCCCCCTCCACAATCTGACACATCGTCTAAAGACCATAGTGGCTCGGAGAGCCCCATCAGCGACGAGGAGGAGAGACTCCAAACCAAACTTTCCGACTCGCATGCGATAGAGGCTGAGAAATTCCAGTGCAGCTTATGCAGCAAGACCTACTCTACTTTCTCTGGGTTGGCTAAGCACAAGCAGCTGCATTGCGACGCCCAGTCTCGGAAATCATTTAGCTGCAAGTACTGTGAAAAGGAGTATGTGAGCTTGGGCGCGCTAAAGATGCACATCAGGACACACACGTTACCCTGCGTATGTAAAATCTGTGGCAAAGCCTTTTCTAGACCGTGGCTACTACAAGGGCACATCCGCACTCACACTGGAGAAAAGCCCTTCTCGTGTCCACACTGCAACAGAGCATTCGCAGACAGATCCAACTTAAGAGCCCACCTGCAGACCCATTCTGATGTGAAGAAATATCAATGCAAGAACTGTTCCAAAACTTTCTCTAGAATGTCACTCCTTCACAAGCATGAGGAATCTGGTTGCTGTGTAGCACATTAGATTGCAGTATGTTTACCAGGACTTAACACCTCCTGCAGGGTTTCTGGTGTAAAAGAATTCCAAACATATTTTTCTTACCTCTTTTTTTTCCTATGAAAAGGAAAGCCTATGCAAGATTTACCAAAACATCAGCATTTCAGGTTCGATTTGCAGTATGGATTACAAATAATAGAAACACATTTCCATATGGCAGCAAGGATCAATGAAATGGTCCTTAAATACGCCCTATTTCCTTGTTGCGTTTAAATCAGGCACATATGTAAAGAGCAATTCTTGCCTAGACAATCCAGCAACGATCCAAAGAACTTTCAGCCTCATTCTCAGGTGCTTTACGAAGCAGCTCAATGAATTTTTTTCTTCCTGAATTGATATGACTCTTAAACTATGCTAAACTAGCTAGGCTCCATTTGTGCCTTTTACACTCATTGCCTTCAGACATTCCTTGGTTTTATTTAAGACTTTTTACCAAATTTTACATAGTAGGATTTTTTTTTTATAAAATTTTGTTCTCATGGGAATAAGTGCAACCAAGAAGGGTTTAAGGGAATGCGAAAATGTAGATCCTGAACTTTTCCTATGCACAAAAGAAAATGCAACTCATTTTCGGGATTCTCTACCCTTCACGTGCCTTTTTTTATAATAATTTGTAAAATATGTGAATATATTTTGAAATGTTTATATTTTTATATATGTGTGAGAATGTGATGTGTGAAAGGGAGAAGCAGTGTGTAGCTGCTTCTGGGATAACTTGAAATGATGTGCCAATTTGTTTTGCAGATGCTTTTTTTTTTAAATAAAAACTTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA		Refseq >NM_001088649\|Xenopus laevis snail homolog 2 (snai2-b), mRNA GCGCGCAGCGGTGAATGGACTGGGCGCGCACAAGATGCTATAGGGATCCGCTTGAGGCCGGGGAGGAAACATAAGTAGCTCCTTGTGGGGACCGTTACTTTGCGAGGCTTGGGGTCCCCCTCCCTCACTGAAAATGCCACGCTCTTTTCTGGTCAAGAAACACTTCAACACGACCAAAAAGCCGAATTATGGGGAGTTGGACAACCATACAGTGATCATCTCCCCATTCCTGTATGAGCGCTACCCCGTGTCCGTGCTACCCCAGCCTGACATCTACAGCTCGGTGGCCTACAGACCAATCACGGTGTGGACAGGACTGCTTCACCCACCGCTGCCCAGCGATCTCTCCCCTCTCTCAGGATACCCTTCATCTTTAGGTCGGGTCAGCCCCCCTCCACAGTCGGACACGTCGTCTAAAGACCTCAGTGGCTCAGAGAGCCCCATCAGCGACGAGGAGGAGAGACTCCACACCAAACTTTCCGACTCGCATGCGATTGAGGCTGAGAAGTTCCAGTGCAGCTTATGCAGCAAGACCTACTCTACTTTCTCTGGGTTGGCTAAGCACAAGCAGCTGCATTGCGACGTCCAGTCTCGGAAATCATTTAGCTGCAAGTACTGTGAAAAGGAATATGTGAGCCTGGGCGCTCTGAAGATGCACATCAGGACACACACGTTACCCTGCGTCTGTAAAATCTGCGGCAAAGCGTTTTCTAGACCTTGGCTACTACAAGGACACATCCGCACTCACACTGGAGAAAAGCCCTTCTCTTGTCCACACTGCAACAGAGCATTCGCAGACAGATCCAACTTAAGAGCCCACCTGCAGACCCATTCTGATGTGAAGAAATATCAATGCAAGAACTGTTCCAAAACCTTCTCTCGAATGTCGCTCCTTCACAAGCATGAGGAATCTGGTTGCTGTGTAGCACATTAGATCGTCATATGTTTACCAGGACTTCACACCTCCTTCAGGGTTTCTGGTGTAAAAGAATTCCAAACATATATTTCTTACCTCTTTTTTCCTTTCCTATGAAAAGGAAAGCCTATGCAAGATCTACCAAAACGTCAGCATTTCAAGTCTGATTTGTAGTATGGATTACAAATAATAGAAACACTTTTCCGTATGGCAGCAAGGATTAATGAAATGGTCTTTAGATACGCCATATTTCCTTGGCATGAATAAATCAAGCACATATGTAGAGAATGGCTCTTGTCTAGACAATCCAGCAAAAATCCAAAGGACTTTCAGCCTCGTTCTCAGGTGCTTTACTAAGCAGCCCAATGAAATCTTCTCTTCCTGAATTTATAAGACTCTTAAACTATGCCATTGGGTATTGTCATTGTTTTTAGCTAGGCTCCATTTGTGCCTTTTACAGCCATTGCCTTCAGACATTCCTTTGTTTTATTTAAGACTTTTTACAAAAAAAAATTTTATTATAAAATTGACAATTTTGCTCTCATGGGAATAAGTGCAACCGAGAGGGGTTTAAGGGAATGCGAAAATGTAGATCCTGAACTTTTCTTATGCACAAAGAAAATGCAACTTATTTTCGGGATTCTCCACCCTTCATGTGCCTTTTTTTTTATAATAATTTGTAAAATATGTGAATATTGTATATTTTGAAATGTTTATATTTTTCTATATGTGTGAGAATGTGGCGTGTGAAAGAGAGAAGCGGTGTGTAGCTGCTTCAGGGATAACTTGAAATGATGTGCCAATTTGTTTTGCAGATGCTTTTTTTTTAAATAAAAACTTTGGATAAATTTT
Protein		Refseq >NP_989424\|snail homolog 2 [Xenopus (Silurana) tropicalis] MPRSFLVKKHFNSAKKPNYGELDNHTVIISPFLYERYPVSVLPQPELYSSVAYSPITVWTGLLHPPLPSDLSPLSGYPSSLGRVSPPPQSDTSSKDHSGSESPISDEEERLQTKLSDSHAIEAEKFQCSLCSKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCEKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH	Refseq >NP_001079751\|zinc finger protein SNAI2 [Xenopus laevis] MPRSFLVKKHFNSAKKPNYGELDNHTVIISPFLYERYPVSVLPQPDIYSSVAYSPITVWTGLLHPPLPSDLSPLSGYPSSLGRVSPPPQSDTSSKDHSGSESPISDEEERLQTKLSDSHAIEAEKFQCSLCSKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCEKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH UniProtKB		Refseq >NP_001082118\|snail homolog 2 [Xenopus laevis] MPRSFLVKKHFNTTKKPNYGELDNHTVIISPFLYERYPVSVLPQPDIYSSVAYRPITVWTGLLHPPLPSDLSPLSGYPSSLGRVSPPPQSDTSSKDLSGSESPISDEEERLHTKLSDSHAIEAEKFQCSLCSKTYSTFSGLAKHKQLHCDVQSRKSFSCKYCEKEYVSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNLRAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.2 [+] Str.53257	Xl.3818		Xl.11972
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		207 expression image(s) for tropicalis and laevis

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	SNAI2	OMIM:172800 OMIM:608890
mouse		MGI	Snai2	All(5) Targeted, knock Out(3) Targeted, other(2)
zebrafish		ZFIN	snai2

Publications
First:		Induction of the prospective neural crest of Xenopus. [Development 1995]
Most recent:		The dual regulator Sufu integrates Hedgehog and Wnt signals in the early Xenopus embryo. [Dev Biol 2013]
		View All Papers 69 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		nucleic acid binding zinc ion binding
Biological:
Cellular Component:		nucleus
EC:
KOG:		[K] C2H2-type Zn-finger protein

Reagents		tropicalis	laevis a		laevis b
Clones		EXRC - 1 clone(s)	EXRC - 3 clone(s)
		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.2.1.S1_at	Xl.3818.1.S1_at		Xl.11972.1.S1_at
Affymetrix 2.0			Xl2.3818.1.S1_at		Xl2.11972.1.S1_at

Symbol legend[+]