msx1 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

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Summary

Gene Literature (82)

Nucleotides (251)

Interactants (343)

XB-GENEPAGE-490377

Gene Symbol: msx1 Gene Name: msh homeobox 1 Synonyms: hox7, hox-7, msx-1, Xmsx-1, xmsx1, Xhox-7.1 Add Xenopus synonyms Gene Function: homeodomain transcription factor Interactants: bmp4(36) , snai2(25) , sox2(22) , pax3(19) , nog(18) , foxd3(16) , myod1(16) View All	1/7

XB-GENE-490378

XB-GENE-490382

XB-GENE-6253888

Molecules		tropicalis	laevis a		laevis b
Gene		JGI XT Genome 7.1 JGI XT Genome 4.1 Ensembl 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene		Entrez Gene
mRNA		Refseq >NM_001037252\|Xenopus (Silurana) tropicalis msh homeobox 1 (msx1), mRNA CACTCGCCCGCTGTAACTTCCCAGCTCGGATATCTCTGTATGGCCCCGGCTCTGCTTATGGCTACTTACCAGCCCGGGGTGAAAGTAGAAGAAAGTCCTTCTGTGAATAAGATGCAAACCGGCCTGAAGGTGGCCCTGGGCGAGGACAAGCCCAAAGTGCCCGGGATCCTGCCCTTCAGTGTGGAGGCCCTGATGGCCGATAGGAAGCCTGGGAGAGAAAGAGACCTGTCCAGCCCCACTGGATCTCCGCTGGCAGGGACTTCTCACAGCCCCAGGGTGGGCTCTTTAGCGCCCGGGGAGACCCCCAACTCCCCCATATCCATTGGAAACCGCTTCCCTGTGGGGGGCATCATGAAACTGCCGGAGGAGGCGCTGGTCAAGCCGGAGAGCCCAGAGAGGAGCTCATGGATCCAGAGCCCCAGGTTCTCCCCTTCCCCAACAAGAAGGATGAGTCCCCCCGCCTGCACTTTGAGAAAGCACAAAACCAACAGAAAGCCCAGGACCCCCTTCACTACATCCCAGCTGCTGGCCCTGGAGAGGAAATTCAGGCAGAAGCAGTATCTGTCCATAGCCGAGAGGGCAGAGTTCTCCAGCTCCCTCAACCTCACAGAGACCCAAGTGAAGATCTGGTTCCAGAACAGGAGAGCCAAAGCCAAAAGACTCCAAGAAGCAGAGTTGGAAAAGCTCAAAATGGCTGCCAAACCCATGCTCCCCCCTGCATTTGGTATCTCCTTTCCTCTTGGGACTCCAGTACCCACAGCCTCCTTGTATGGGACCTCCAACCCTTTCCAGAGGCCGGCTCTGCCAGTGTCTCCTATGGGACTTTACACAGCCCATGTTGGATACAGCATGTATCATCTCTCCTAAGACTTGGTCGCACTCCATTGGGACTATGGGCAAGAAGACTTGAGTGAATTTTCTGTGCACCCCTATATTTTTTCACTATTTATGAGTTCCTAGGGAATTGAATTGTAGAAATACTATGTCACTTCAATATGCCTATTGTTGTCATCTTGTTAGCTGTGTCTAATTAGTAGTCCATGAGTTTCAGGTGTCAACCAGCTTCCCAAGCCCTAATTGGGCAGCCTTAGTGCTATCCCAGAACCGAGGGAATATCTGTAACATTGAAAGCATCCACTGCTTCAGGAGTTATCCCAGATTGCATGGAAAGGCTTCCCAGCAAAGGTGGTGAGCAGTGTAAATATATTATAATATGGTACAAGCAGGATTGGGAGCTTAATCGATTTGCTGCAGAAGGGATCAGTAGTCCCCTGACCCAAACTGGGGTAAGGATAAATAGCTTAATTTGGGGTGGGACCTGCTGCTGTGTAACTTTAGGTTTGGGGAGCTTGGCACCTCCACAGAATGACAAGATTGATAAAGGGAGTAAAATATCTCTTACATATAAGAGATACATGTAATATAGTATTGAAACTTTCACTTAACAGCACTGTCTGTTTGCGTTTCGTTATTGCAATAATCCCTTTGGAAGGGATTGTATGTAATATGTAATATATTGTATATTTGAAATTTATTATCATTTATATTATAGTTATATTTGTTAAATAAATTAATTTTAATGCAAAAAAAAAAAAAAAAAA	Refseq >NM_001105270\|Xenopus laevis msh homeobox 1a (msx1a), mRNA CTCAGCTCGGATCTCTCTGTATGGCCCCGGCTTTGCTTATGGCTTCTTACCAGCCCGGGGTGAAAGTAGAAGAAAGTCCTGTGAATAAGATGCAACAAACTGGCCTGAAGATGTCCCTGGGCGAGGACAAGCCCAAAGTGCCTGGGATATTGCCTTTCAGCGTGGAGGCCCTCATGGCTGATAGGAAACCTGGGAGAGATAGGTCCAGCCCAACTGCATCTCCGCTGGTCGGGACATCACACAGTCCCAGGGTGGCTTCTGTAGCGGCTGGAGAGACCCCCAACTCCCCCATATCCCTTGGAAACCGCTTCCCTGTAGGGGGAATTATGAAACTGCAAGAGGAGGGTCTGGTCAAGCCTGAGAGTCCCGAGAGGAGCTCATGGATCCAGAGCCCCAGCTTCTCACCTTCCCCAACAAGAAGGATGAGCCCACCCCCTTGCACTTTGAGAAAGCACAAAACAAACAGAAAGCCCAGAACCCCCTTTACTACATCCCAACTGCTGGCTCTGGAGAGGAAATTCAGGCAGAAGCAGTATCTGTCCATAGCAGAGAGGGCAGAGTTCTCCAGCTCCCTGAACCTCACAGAGACCCAAGTGAAGATCTGGTTCCAGAACAGGAGAGCCAAAGCCAAAAGACTCCAAGAAGCAGAACTGGAAAAGTTTAAAATGGCTGCCAAACCCATGCTCCCACCTGCATTTGGAATCTCCTTCCCTCTTGGGACTCCAGTACCCACAGCCTCCTTGTATGGGACCTCCAACCCTTTCCAGAGGCCGTCTTTGCCAGTGTCTCCTATGGGACTTTACACAGCCCATGTTGGATACAGCATGTACCATCTGTCCTAAGACTTTGCTCAGGCTCCATTGGGACTGTGGGAAAGAAGACTTGAGTGAATTTTCCTTGCATCCCCTTATATTTTTTCACTATTTATGAGTTCCTAGGGAATTGAATTGTAGAAATACTATGTCACTTCAATATGCCTATTGTTGTCATCTTGTTAGCTGTGTCTAATTAGTAGTTCATGAGATTCAGGTGCCTTGTACACTACCATCTTCCCAAATTCTAATCCCAGTCCATAACGTATCAGAACCCAGGGGATATCTGTAGCCTCAAAAGCATCCAATCCACTGCTTCAGGAGTTGTCCCAGATGGAAAGGCTTCCCAGCAAAGGTGGTGAGCACAGTGTAAATATACTATAATATGGTACAAACAGGACTGGGAACTTAATCGATTGGAGAAGAGATCCTTTGACCCAGACTGGGTAAGGGGGAAATAGCATAATTTTGGGTGGGACCAGCTGCTGTGTAACTGTACCTTTTGGGAGCTTGGCACAACCACAGAATGACAAGATTGATAAAGGGAGAAAAATATCTCTTACATATAAGAGATAAATGTAATATAGTATTGAAGCTTTCACTTAACAGCACTGTCTGTTTGCATTTCGTTATTGCAATAATCCCTTTGGGAGGGATTGTATGTAATATGTAATATATTGTATATTTGAAATTTATTATCATTTATATTATAGTTATATTTGTTAAATAAATTAATTTTAATGTAAAAAAAAAAAAAAAAAAAAAAAAA		Refseq >NM_001090898\|Xenopus laevis msh homeobox 1 (msx1-b), mRNA CTGGTGCCCGGGGATTCGTTGTATGGATCGCACTCCCCTACTGTAACTTCTCAGCTCGGATCTCTCTGTATGGCCCCGGCTCTGCTTATGGCTTCTTACCAGCCTGGGGTGAAAATAGAAGAACGTCCCTTGAATAGGATGCAACAAACTGGTGTGAAGCCGTCCCTGGGCGAGGACAAGCCCAAAGTGCCCGGGATCCTGCCTTTCAGCGTGGAGGCCCTCATGGCCGATAGGAAACCTGGGAGAGACCGGGACCTGTCTAGCCCCACTGGATCTCCGCTGGCAGGAACATCACACAGTCCCAGGGTGGGATCTATTGCAGCCGGAGAGACCCCCAACTCCCCAATTTCACTTGGAAACCGTTACCCTGTAGGGGCCATTATGCAACTGCCAGAGGAGACGCTGCTCAAGCCTGAGAGTCCCGAGAGAAGCTCATGGATCCAAAGCCCAAGCTTCTCACCTTCCCCAACAAGAAGGATGAGCCCACCCGCCTGCCCTTTGAGAAAGCACAAAACCAACAGAAAGCCCAGGACCCCCTTCACTACATCCCAACTGCTGGCCCTGGAGAGGAAGTTCAGGCAGAAGCAGTATCTGTCCATAGCAGAGAGGGCAGAGTTCTCCAGCTCCCTCAACCTCACAGAGACCCAAGTGAAGATCTGGTTCCAGAACAGGAGAGCCAAAGCCAAAAGACTCCAAGAAGCAGAGCTGGAAAAGCTAAAAATGGCTGCTAAACCCATGCTCCCCCCTGCATTTGGTATCTCCTTCCCTCTTGGGACCCCAGTACCCACAGCCTCCTTGTATGGGACCTCTAATCCTTTCCAGAGGCAGGCCTTGCCAATGTCTCCTATGGGACTTTACACAGCCCACCTTGGATACAGCATGTACCATCTGTCCTAAGACTTGTTTATGCTCCATTGAGACTGTGGGAAAGAAGACTTGAGTGATTTTTTCTTGCACTCCCTATATTTTTTCACTATTTATGAGTTCCTAGGGAATTGAATTGTAGAAATACTATGTCACTTCAATATGCCTATTGTCATCTTGTTAGCTGTGTCTAAATCATGAGTTCCAGGTGTCTTGCTCACTACCAGCTTCCCAAGTTCTTATCCCAGTCCATAAAGTATCAGAACCGAGGGGATATCTGTAACCTTGAAAGCACCAAACCCACTGCTTCAGGAGTTGTCCTACATTGTAGGGAAAGGCTTCCCAGCAAAGGTGGTGAGCAGTGTAAATATTATATTATAATATGGTGCAAACAGGATTGAGAGTTTGTGCAGAAAAAATCCATAATAATAACCCAGACTGGGGTAAGAGCACAATTTTGGGTGGGACCAGCTGCTGTTTAACTGTAATTTATGGGAGCTTGGCACCTCCACAGAATGACAAGATTGATAAAGGGAGTTAATTATCTCTTACATATAAGAGATACGTGTAAAATAGTATTGAAACTTTCACTTAACAGCACTGTCTGTTTGCGTTTCGTTATTGCAATTATATCCCTTTGGAAGGGAGTGTATGTAATATGTAATATATTGTACATTTGAAATTTATTATCCTTTATATTATAGCTATATTTGTTAAATAAATTAATTTTAATGTAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001032329\|msh homeobox 1 [Xenopus (Silurana) tropicalis] MAPALLMATYQPGVKVEESPSVNKMQTGLKVALGEDKPKVPGILPFSVEALMADRKPGRERDLSSPTGSPLAGTSHSPRVGSLAPGETPNSPISIGNRFPVGGIMKLPEEALVKPESPERSSWIQSPRFSPSPTRRMSPPACTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAFGISFPLGTPVPTASLYGTSNPFQRPALPVSPMGLYTAHVGYSMYHLS	Refseq >NP_001098740\|msh homeobox 1 [Xenopus laevis] MAPALLMASYQPGVKVEESPVNKMQQTGLKMSLGEDKPKVPGILPFSVEALMADRKPGRDRSSPTASPLVGTSHSPRVASVAAGETPNSPISLGNRFPVGGIMKLQEEGLVKPESPERSSWIQSPSFSPSPTRRMSPPPCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKFKMAAKPMLPPAFGISFPLGTPVPTASLYGTSNPFQRPSLPVSPMGLYTAHVGYSMYHLS		Refseq >NP_001084367\|homeobox protein XHOX-7.1 [Xenopus laevis] MAPALLMASYQPGVKIEERPLNRMQQTGVKPSLGEDKPKVPGILPFSVEALMADRKPGRDRDLSSPTGSPLAGTSHSPRVGSIAAGETPNSPISLGNRYPVGAIMQLPEETLLKPESPERSSWIQSPSFSPSPTRRMSPPACPLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPMLPPAFGISFPLGTPVPTASLYGTSNPFQRQALPMSPMGLYTAHLGYSMYHLS UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase	Xenbase JGI Ensembl UCSC		Xenbase

Synteny		Metazome

Expression		tropicalis	laevis a		laevis b
UniGene		Str.2153	Xl.60027		Xl.45216
Unigene EST Profile		EST Profile	EST Profile		EST Profile
GEO data			GEO		GEO
Images		87 expression image(s) for tropicalis and laevis

Phenotype		tropicalis	laevis a		laevis b
Smith Morpholino Screen		tgas131h15

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	MSX1	OMIM:106600 OMIM:608874 OMIM:189500
mouse		MGI	Msx1	All(7) Targeted, knock Out(2) Targeted, other(4)
zebrafish		ZFIN	msxe

Publications
First:		Progressively restricted expression of a new homeobox-containing gene during Xenopus laevis embryogenesis. [Development 1991]
Most recent:		Light-activation of the Archaerhodopsin H(+)-pump reverses age-dependent loss of vertebrate regeneration: sparking system-level controls in vivo. [Biol Open 2013]
		View All Papers 25 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:		DNA binding transcription factor activity
Biological:		regulation of transcription, DNA-dependent
Cellular Component:		nucleus
EC:
KOG:		[R] Transcription factor MSH, contains HOX domain

Reagents		tropicalis	laevis a		laevis b
Clones					EXRC - 2 clone(s)
		open biosystems	open biosystems		open biosystems
		geneservice/RZPD imagenes	geneservice/RZPD imagenes		geneservice/RZPD imagenes
Affymetrix 1.0		Str.2153.1.S1_at	Xl.1794.1.A1_at		Xl.16449.1.S1_at
Affymetrix 2.0			Xl2.45216.1.S1_at		Xl2.16449.1.S1_at

Symbol legend[+]