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Summary Expression Gene Literature (22) GO Terms (18) Nucleotides (456) Proteins (61) Interactants (177) Wiki
XB-GENEPAGE-493238
Gene Symbol:
ldb1

Gene Name:
LIM domain binding 1

Synonyms:
xldb1 , nli , clim2 ( Add synonyms , Nomenclature history )

Gene Function:
transcription cofactor

Protein Function :
Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the ...[+]


InterPro :
Ig sub2 , Ig-like fold , Ig-like dom sf , Ig-like dom [+]

Interactants:
Loading ...

Diseases: 


External Links:
 
Xenbase Gene ID XB-GENE-493239 XB-GENE-866237 XB-GENE-17336783
Gene Symbol ldb1 ldb1.L ldb1.S
Chromosome Chr7 chr7L chr7S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 10.0 Version 9.1 Version 9.1
CDS Gene model Gene model Gene model
Entrez Gene 407886
380241
779363
mRNA RefSeq NCBI Nucleotide NCBI Nucleotide
Protein RefSeq Swiss-Prot  More.. NCBI Protein RefSeq  More.. RefSeq Swiss-Prot  More..
Genomic
 X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Proteomics X. tropicalis X. laevis.L X. laevis.S
Embryonic Protein Expression Stage profile: Stage profile:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine ldb1 ldb1.L ldb1.S
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC, AGR, Monarch, OMIM, GeneCards LDB1 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Ldb1 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Ldb1 Ensembl
zebrafish
ZFIN, AGR ZFIN, AGR ldb1b ldb1a ZFIN Ensembl
chicken
GEISHA LDB1 Ensembl
fruit fly
Publications
First Interactions of the LIM-domain-binding factor Ldb1 with LIM homeodomain proteins., Nature 1996  
Most Recent Evolution of cis-regulatory modules for the head organizer gene goosecoid in chordates: comparisons between Branchiostoma and Xenopus., Zoological Lett 2019                  
All View All Papers 3 paper(s) referencing morpholinos
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 16 terms 11 terms 4 terms
PANTHER ldb1
KEGG Pathways K15617 K15617 K15617
KOG [K] LIM domain binding protein LDB1/NLI/CLIM
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks ldb1
Morpholinos ldb1 MO1 ldb1 MO1 ldb1 MO1
ORFs ldb1 ORF1 ldb1.L ORF1
Clones Horizon Source BioScience Horizon Source BioScience Horizon
Plasmids Addgene Addgene

Symbol legend: Blast sequence    View sequence    Literature or expression images   Hover cursor for info