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Summary Expression Gene Literature (5) GO Terms (6) Nucleotides (125) Proteins (19) Interactants (420) Wiki
XB-GENEPAGE- 5900837

Gene Symbol: kdm2a

Gene Name: lysine (K)-specific demethylase 2A

Synonyms: fbxl11 , jhdm1a
Add Xenopus synonyms , Nomenclature history


Gene Function: zinc finger, CXXC type

Protein Function:
Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. Preferentially demethylates dimethylated H3 'Lys-36' residue while it has weak...[+]


Interactants: YYY

OMIM Disease Associations:
1/2
 
Xenbase Gene ID XB-GENE-5900838 XB-GENE-17331848 XB-GENE-6485793
Gene Symbol kdm2a kdm2a.L kdm2a.S
Chromosome scaffold_67 chr7L chr7S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 9.1 JBrowse 9.1 GBrowse 6.0
Entrez Gene
mRNA Refseq
Protein Refseq Swiss-Prot
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v7.1 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.11178 Xl.68440 [+]
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Images 7 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine kdm2a kdm2a.L kdm2a.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen tneu054b08      
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards KDM2A OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Kdm2a MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN kdm2ab kdm2aa ZFIN Ensembl
chicken
GEISHA KDM2A Ensembl
fruit fly
worm
WORMBASE
Publications
First: Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides. [PLoS Genet 2006]
Most recent: High variability of expression profiles of homeologous genes for Wnt, Hh, Notch, and Hippo signaling pathways in Xenopus laevis. [Dev Biol 2017]
View All Papers 2 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 6 terms 0 term 0 term
EC
PANTHER kdm2a
KEGG Pathways K10276
KOG [B] F-box protein JEMMA and related proteins with JmjC, PHD, F-box and LRR domains
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience Source BioScience
Morpholino kdm2a MO1 , kdm2a MO2 kdm2a MO1 , kdm2a MO2 kdm2a MO1 , kdm2a MO2
Affymetrix 1.0 Str.11178.1.S1_at [+]
Affymetrix 2.0 Xl2.54529.2.A1_at [+]

Symbol legend[+]

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