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Summary Expression Gene Literature (4) GO Terms (17) Nucleotides (225) Proteins (30) Interactants (48) Wiki
XB-GENEPAGE- 966777

Gene Symbol: jmjd6

Gene Name: jumonji domain containing 6

Synonyms: psr , ptdsr , ptdsr1 , jmjd6-a , jmjd6-b
Add Xenopus synonyms , Nomenclature history


Gene Function: Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain

Protein Function:
Dioxygenase that can both act as a histone arginine demethylase and a lysyl-hydroxylase. Acts as a lysyl-hydroxylase that catalyzes 5-hydroxylation on specific lysine residues of target proteins such a...[+]


Interactants: YYY

OMIM Disease Associations:
1/3
 
Xenbase Gene ID XB-GENE-966778 XB-GENE-6255376 XB-GENE-6078236
Gene Symbol jmjd6 jmjd6.L jmjd6.S
Chromosome scaffold_10 chr9_10L chr9_10S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0 GBrowse 9.1 JBrowse 9.1 GBrowse 7.2 JBrowse 7.2 GBrowse 6.0
Entrez Gene
Entrez Gene
Entrez Gene
mRNA Refseq Refseq Refseq
Protein Refseq TrEMBL Refseq Swiss-Prot TrEMBL Refseq Swiss-Prot TrEMBL
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v7.1 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.7456 Xl.16707 Xl.16315
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Images 6 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine jmjd6 jmjd6.L jmjd6.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen    
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards JMJD6 OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Jmjd6 MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN jmjd6 ZFIN Ensembl
chicken
GEISHA JMJD6 Ensembl
fruit fly
worm
WORMBASE
Publications
First: Divalent cation selectivity is a function of gating in native and recombinant cyclic nucleotide-gated ion channels from retinal photoreceptors. [J Gen Physiol 1999]
Most recent: Persistent fibrosis, hypertrophy and sarcomere disorganisation after endoscopy-guided heart resection in adult Xenopus. [PLoS One 2017]
View All Papers 1 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 1 terms 16 terms 16 terms
EC
PANTHER jmjd6
KEGG Pathways K11323 K11323 K11323
KOG [BT] Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience Source BioScience Source BioScience
Morpholino jmjd6 MO1 jmjd6 MO1 jmjd6 MO1
ORF jmjd6 ORF2 jmjd6 ORF1
Affymetrix 1.0 Str.7456.1.S1_at [+] Xl.16707.1.A1_at Xl.16315.1.S1_at
Affymetrix 2.0 Xl2.16707.1.S1_at Xl2.16315.1.S1_at

Symbol legend[+]

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