tbx6 Summary [species: Xenopus laevis and Xenopus tropicalis] - Xenbase Gene Catalog

My Xenbase
[Login] [Register]

Search

Summary

Gene Literature (25)

Nucleotides (205)

Interactants (100)

XB-GENEPAGE-6257418

[provisional- machine annotated only] Gene Symbol: tbx6 [Predicted: Source is Human Entrez Gene] Gene Name: T-box 6 [Predicted: Source is Human Entrez Gene] Synonyms: dfnb67, XTbx6 Add Xenopus synonyms Gene Function: transcriptional activator Interactants: t(12) , wnt8a(10) , vegt(9) , myf5(8) , fgf8(6) , myod1(6) , odc1(6) View All

XB-GENE-6257419

XB-GENE-6254214

Molecules		tropicalis	laevis
Gene		JGI XT Genome 4.1 JGI XT Genome 4.1	JGI XL Genome 6.0
		Entrez Gene	Entrez Gene
mRNA		Refseq >NM_001007994\|Xenopus (Silurana) tropicalis t-box 6 (MGC79458), mRNA GGAGCTGAGAGGGTCCCTGCACCCAATGTACTGAGCCCCCCGGAGCCGGAATGTACCACTCAGAGCTCTTCCAGCAGTATGGCACCTCCTACGGGATGAGACCCCCTCATGCCCTGGCACCCACCTACCCCACTGCTGGGGGTCACCATGAAGCTTACAGATACCCAGAGTTGGATGTGCCCGGCCAGAGGTTTGATGGGCTGTTCCCGGCGCTGGACCCTTCCCAAAGGATTCTGGGAGCGCCCCCTCTCACCCCTCTCTCATTGCCCCCTGGTCCTGCCCTGGGGTTCGGCCAGCTGCAGCCCCCCTGCGAAACCCCCCAGCTGCCCGGGAACGTGAAGATGAACCTGGAGAACAAGGAGCTATGGAAGCAGTTTCACTCCATCGGCACCGAGATGATCATCACCAAGTCTGGGAGGCGTATGTTCCCCCAGTGCAAGGTCAGTGTTACCGGGCTGGAACCGGACGGCAAGTACCTGCTCTTGGCCGATATCGTCCCAATCGACAACTCTCGCTACAAGTGGCAGGAGGATCGCTGGGAGCCCAGCGGGAGGGCCGAACCCCGACTCCCCGAGAGGGTCTATATCCACCCCGACTCCCCCGCCCCCGGGTCCCACTGGATGAAACAACCCATCTCCTTCCACAAGATCAAACTCACCAACAACACCCTGGACCAGATGGGCCACATCATCCTGCACTCCATGCACAAGTACCAGCCTCGCTTCCATATTGTACGGGCCCAGGACGTGTTCAGCCGCCGCTGGGGGGGCTGCTCCTCCTTCACCTTCCCAGAGACCCTATTCCTGACTGTCACAGCCTATCAGAACGAGAAGATTACGCAGCTGAAGATTCAGACCAACCCGTTTGCGAAAGGATTTCGGGAGGACGGAATGAAGAGCAAAAGGGACCGCTCCACCCGGGTGAAGAGGAAAGTGATTGAGCCGGAGGAGGAGGAGGAGGAGTTCCAGCCGGAGGGTGAGTGCAAGCGGCCCCTCTACACCGGCCCCTGTGACTCCACCCTGAGTGAGGAGCTGGATATAGGGAGGGGCTTGGGTATCCCCCTCCCCAGTCCCGACTGCTCTTTCCACCCAATCACACCACCATCCCGGACTCCGCCTTCCACGCAAACCCCTAACCCTTCTCTGACAGCCAATCAGGAACAAGGAGCCGCCCTGGAGATGTCCTCACAGACCCCGGAGACCTTCCTGCAGGCAGCGGGGCAGTCGTACCCCGAGCAGCCCCCCGTCAGAGGCGGCAGCCTGTACCCCTGCCCCACAGATGGACACGGAGCCCAGAACCAGCGCCACCCACTGTCGGTTCAGCGTTTGCCGCAGGCGTTTCAGGGGCTCCAGGAGTCGCTCGGTAACAGCCCAGGGGAATACAAGATTTATGGGGGGGACGTGGGCTGCGGAGGAGACTTTGCCCCCCCATCCTGTGCGGTGGCTCCGAGCGTTCGGCCCAGTGAGGAGCGATTGCCCCGGGGCTACTCCATGAACTCTGAGCTCCGCTTCCCACACTTCCTGCCCAACGGGGGGTCCAAAATCGGCCTGCAGTTCTCTGGGGCGCAGCTGCAGCGCCTCTATAACGGGGGGGGCTGGATGTGAGGGTGGGACCCCCTATTCACACCAAGGCTGCTCAGCAGGAAAGGAAGGTGCTTCCCCCCCAAATAGGGACAAGGTGGGGTCTGGGTGCAGATTTACCCCCAGTGACCAAGAGGAACCAGGCAAGGAGGGGGGGGGAATAAGGAGCCCCCCGAGAAGGACATTCTGGCCACGCCCCGTTGGGACCCAAAGCAGAATATTATGATGTATATTTGTATCACACAGAGCCAATGAGAGTAGGTCTCTGTACACTGACTCCGCCCTCTCCCCGTCGCGATTGGGCGAGTGATTGGGCCTCTCCCAGATACAGTGTTTCCTTCCACTTCCCACAGGCAGGGGGCGCTGTGTCCCACACACTGGGAGGTTCTGCGGAACTGAATGGGTTTGGCTTCTGCTCATTGGACTCATTGGCCCGGAATTTTGTAATTATTTATCAAACATTTTGTGTTTTGTATTTTTGTTTCCGATGGACGAAGAGAATTTATCTTTTTCATTAAAATGTATTTCTTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	Refseq >NM_001087696\|Xenopus laevis T-box gene Tbx6 (tbx6), mRNA ACGCGGGGAGAATCAACTAGTCACTCGGCCGAGAGGATCCCCCCAATGTACTGACCCCCAGCAGCCATGTACCACTCTGAGCTCTTCCAGCAGTATGGCACCTCCTACACGATGAGACCACCTCATGCCCTGGCACCCACCTACCCCAGCGCTGGGGGGCACCACGACTCTTACAGATACTCAGAGTTGGATGTTCCCAGCCAGAGGTTTGATGGTCTGTTCCCGGCCCTGGAGCCTTCACAGAGGATTCTGGGAGCCCCCCCTCTCACACCCCTCTCACTGCCCCCGGGTCCTGCCCTGGGATTTGGGCAAGTGCAGCCCCCCTGCGAGACCCCCCAGCTGCCCGGGAATGTCAAGATGAAGCTGGAGAACAAGGAGCTTTGGAAACAGTTCCACTCCATCGGCACCGAGATGATCATCACTAAGTCTGGCAGGCGCATGTTCCCCCAGTGTAAGGTGAGTGTGTCGGGGTTGGAAGCGGATGGGAAGTACCTGCTCCTGGCGGATCTTCTGCCCGTGGACAACTCTCGCTACAAGTGGCAGGAAGATCACTGGGAGGCAAGTGGGAGGGCGGAGCCAAGACTCCCCGAGAGGGTCTATATCCACCCCGATTCCCCCGCCCCCGGATCCCACTGGATGAAACAACCCATTTCCTTCCACAAGATCAAACTGACCAACAACACTCTGGACCAGATGGGCCACATCATCCTGCACTCCATGCACAAGTACCAGCCCCGCTTCCATATTGTCCGTGCCCAGGACGTGTTCAGCCGACGCTGGGGGGGCTGCTCCTCCTTCACCTTCCCAGAGACCCTCTTCCTCACTGTCACAGCCTATCAGAATGAGAAGATAACACAACTGAAGATCCAAACAAACCCATTTGCAAAAGGATTTCGGGAGGACGGGATGAAGAGCAAGAGGGATCGCAGTATCCGGGGGAAGAGGAAGGTGATCAGTGTGGAACAGGAACAGGAAGAGGAGGAGCAATTCCAGCCTGAGGGTGAGTGTAAGAGACCCCCCCTGTACAGTGGCCCCTGTGACTCGACTCTGAGTGAGGAGCTGGATATAGGGAGGAGCCTGGGGATCCCCAGTCCCAACTGCTCTTTCCACCCAATCACGCCGCCTACACAGACTCCGCCTTCCACTGAAACCCCTAACCCTTCTCTGCCAGCCAATCAGGAACAAGGAGCCCCCCTGCAGATGTCCTCCCAGACCCCGGGGACCTTCCTACAGACGTATCCAGAGCCCCCCCGAGGTGCCAGCAGCCTGTACTCCTGCAGCCCCACAGATGCAGCACAGAACCAGACCCTGCGGCCGTCAGCCCAACGATTACCTCCCGGCTACCAGGAGTCGCCTCACATCAGCCACAGTCAAGGGGAACTCAAGATCTATGGGACGGAGATGGGACCCCCAGGAAACTTTAACCCCCCATCCTGTGCAGTGACCCCCAGTGTCCGACTCAGCGACGAGCCAATGGGCAGAGGTTTCTCCATGAACTTCCCGCACTTCCTGCCCAACAACAAGATTGGACTGCAGATTTCTGGGGCGCAGCTGCAGCGCATGTACAATGGGGGGGGCTGGATGTGAGACTATTGATTGGCAGGTACAGCACGAACGTGGTTACCCCCAAAAAGGGACAAGGGGAGGGGCCTGGAGCCTCTAATGACTGATCCCTGTAGAGGAGGAAGCACCAGGGGAAATACCCCACCCAGAAGCAAAAGTCACAGCGCCCCATCCTGGCTGCATAACATGTGGGACCCAGAGCAAATATTATGTACATACCCCACTTTGTACATAGACTGATCCCACTGATCCTGGTCACTAGTGGGAATTCAGCCTCACTCTCCCTCCCAGTTCAGCCCCTGATTAATAATGAGCTGCTCCCCCTCTGATCTATTCTGTATCCAGCTGACAGGGGGCGCTCAAACAACTGCTGGGTCTTTCTCATTGCCCCCGAATTTGTAATTATTTATCAAAACTTGTCTTCTTTAATTTTTCTATTTTTGCTTTTTTTTCTGATGGACAAAGAATTTATCTTTTTCATTAAAAGACTTTTCTTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Protein		Refseq >NP_001007995\|T-box transcription factor TBX6 [Xenopus (Silurana) tropicalis] MYHSELFQQYGTSYGMRPPHALAPTYPTAGGHHEAYRYPELDVPGQRFDGLFPALDPSQRILGAPPLTPLSLPPGPALGFGQLQPPCETPQLPGNVKMNLENKELWKQFHSIGTEMIITKSGRRMFPQCKVSVTGLEPDGKYLLLADIVPIDNSRYKWQEDRWEPSGRAEPRLPERVYIHPDSPAPGSHWMKQPISFHKIKLTNNTLDQMGHIILHSMHKYQPRFHIVRAQDVFSRRWGGCSSFTFPETLFLTVTAYQNEKITQLKIQTNPFAKGFREDGMKSKRDRSTRVKRKVIEPEEEEEEFQPEGECKRPLYTGPCDSTLSEELDIGRGLGIPLPSPDCSFHPITPPSRTPPSTQTPNPSLTANQEQGAALEMSSQTPETFLQAAGQSYPEQPPVRGGSLYPCPTDGHGAQNQRHPLSVQRLPQAFQGLQESLGNSPGEYKIYGGDVGCGGDFAPPSCAVAPSVRPSEERLPRGYSMNSELRFPHFLPNGGSKIGLQFSGAQLQRLYNGGGWM UniProtKB	Refseq >NP_001081165\|T-box transcription factor TBX6 [Xenopus laevis] MYHSELFQQYGTSYTMRPPHALAPTYPSAGGHHDSYRYSELDVPSQRFDGLFPALEPSQRILGAPPLTPLSLPPGPALGFGQVQPPCETPQLPGNVKMKLENKELWKQFHSIGTEMIITKSGRRMFPQCKVSVSGLEADGKYLLLADLLPVDNSRYKWQEDHWEASGRAEPRLPERVYIHPDSPAPGSHWMKQPISFHKIKLTNNTLDQMGHIILHSMHKYQPRFHIVRAQDVFSRRWGGCSSFTFPETLFLTVTAYQNEKITQLKIQTNPFAKGFREDGMKSKRDRSIRGKRKVISVEQEQEEEEQFQPEGECKRPPLYSGPCDSTLSEELDIGRSLGIPSPNCSFHPITPPTQTPPSTETPNPSLPANQEQGAPLQMSSQTPGTFLQTYPEPPRGASSLYSCSPTDAAQNQTLRPSAQRLPPGYQESPHISHSQGELKIYGTEMGPPGNFNPPSCAVTPSVRLSDEPMGRGFSMNFPHFLPNNKIGLQISGAQLQRMYNGGGWM UniProtKB

Genomic		tropicalis
Genome Browser		Xenbase JGI UCSC			Xenbase

Synteny

Expression		tropicalis	laevis
UniGene		Str.1637	[+] Xl.7697 Xl.9564
Unigene EST Profile		EST Profile
GEO data			GEO
Images		10 expression image(s) for tropicalis and laevis

Phenotype		tropicalis	laevis
Smith Morpholino Screen		tgas124n10

Orthology		MOD	Entrez Gene	Genetic Phenotypes	Morphants
human		OMIM:Gene, HGNC	TBX6
mouse		MGI	Tbx6	All(7) Targeted, knock Out(2) Chemically Induced(1) Spontaneous(1) Targeted, other(3)
zebrafish		ZFIN	tbx6

Publications
First:		Characterization of the zebrafish tbx16 gene and evolution of the vertebrate T-box family. [Dev Genes Evol 1998]
Most recent:		Optimal histone H3 to linker histone H1 chromatin ratio is vital for mesodermal competence in Xenopus. [Development 2013]
		View All Papers 7 paper(s) referencing morpholinos

Functional Ontologies
GO: Molecular:
Biological:
Cellular Component:
EC:
KOG:

Reagents		tropicalis	laevis
Clones		open biosystems
		geneservice/RZPD imagenes
Affymetrix 1.0		Str.1637.1.S1_at	Xl.7697.1.S1_at [+] Xl.9564.1.A1_at
Affymetrix 2.0			Xl2.7697.1.S1_at [+] Xl2.9564.1.A1_at

Symbol legend[+]