Click here to close Hello! We notice that you are using Internet Explorer, which is not supported by Xenbase and may cause the site to display incorrectly. We suggest using a current version of Chrome, FireFox, or Safari.

Summary Expression Gene Literature (23) GO Terms (39) Nucleotides (195) Proteins (43) Interactants (783) Wiki
XB-GENEPAGE-853253
Gene Symbol:
prdm1

Gene Name:
PR domain 1

Synonyms:
blimp1 , xblimp1 ( Add synonyms , Nomenclature history )

Gene Function:
transcription factor

Protein Function :
Transcription factor that mediates a transcriptional program in various innate and adaptive immune tissue-resident lymphocyte T cell types such as tissue-resident memory T (Trm), natural killer (trNK) ...[+]



Interactants:
Loading ...

Diseases: 


External Links:
1/7
 
Xenbase Gene ID XB-GENE-853254 XB-GENE-17335875 XB-GENE-853257
Gene Symbol prdm1 prdm1.L prdm1.S
Chromosome Chr5 chr5L chr5S
Molecules X. tropicalis X. laevis.L X. laevis.S
Genomic Sequence Version 9.1 Version 9.2 Version 9.2
CDS Gene model Gene model Gene model
Entrez Gene 493207
108716852
380265
mRNA NCBI Nucleotide NCBI Nucleotide RefSeq
Protein NCBI Protein NCBI Protein  More.. NCBI Protein NCBI Protein  More.. NCBI Protein RefSeq  More..
Genomic
X. tropicalis X. laevis.L X. laevis.S
Genome Browser
(Click image to open in Genome Browser)
Genomic Synteny Genomicus PANTHER
Expression                  Development Stages    Embryonic TissuesAdult Tissues
Summary for
More Information
Xenbase Expression Details In situ images Single cell data at SPRING Ensembl In situ: Single cell: RNA-Seq:
Data Mining X. tropicalis X. laevis.L X. laevis.S
XenMine prdm1 prdm1.L prdm1.S
Phenotype X. tropicalis X. laevis.L X. laevis.S
Smith Morpholino Screen tgas049g17      
Orthology
Knowledgebases Entrez Gene Genetic Phenotypes Gene Expression
human
HGNC AGR, OMIM:Gene, GeneCards PRDM1 OMIM Ensembl, Allen Brain Atlas, Protein Atlas
mouse
MGI, AGR Prdm1 MGI, IMPC Ensembl, Allen Brain Atlas, Eurexpress, MGI
rat
RGD, AGR Prdm1 Ensembl
zebrafish
ZFIN, AGR ZFIN, AGR prdm1a crybg2 ZFIN Ensembl
chicken
GEISHA PRDM1 Ensembl
fruit fly
worm
Publications
First Gene expression screening in Xenopus identifies molecular pathways, predicts gene function and provides a global view of embryonic patterning., Mech Dev 1998                                                              
Most Recent Pituitary cell translation and secretory capacities are enhanced cell autonomously by the transcription factor Creb3l2., Nat Commun 2019                        
All View All Papers 5 paper(s) referencing morpholinos 1 paper(s) referencing OMIMs 1 paper(s) referencing Disease Ontology
Functional Ontologies X. tropicalis X. laevis.L X. laevis.S
GO 37 terms 6 terms 7 terms
PANTHER prdm1
KEGG Pathways
KOG [K] Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains
Reagents X. tropicalis X. laevis.L X. laevis.S
CRISPRscan Tracks prdm1
Morpholinos prdm1 MO1 prdm1 MO1 prdm1 MO1
ORFs prdm1.S ORF1
Clones Horizon Source BioScience Horizon Horizon Source BioScience
Plasmids Addgene Addgene

Symbol legend: Blast sequence    View sequence    Literature or expression images   Hover cursor for info   [+] Expand list
Xenbase: The Xenopus Model Organism Knowledgebase.
Version: 4.15.0
Major funding for Xenbase is provided by grant P41 HD064556