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Summary Expression Gene Literature (2) GO Terms (9) Nucleotides (211) Proteins (38) Interactants (206) Wiki
XB-GENEPAGE- 948301

Gene Symbol: cpsf4

Gene Name: cleavage and polyadenylation specific factor 4

Synonyms: nar , neb1 , cpsf30
Add Xenopus synonyms , Nomenclature history


Gene Function: Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit)

Protein Function:
Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) po...[+]


Interactants: YYY

OMIM Disease Associations:
 
Xenbase Gene ID XB-GENE-948302 XB-GENE-17332920 XB-GENE-948308
Gene Symbol cpsf4 cpsf4.L cpsf4.S
Chromosome Chr09 chr9_10L chr9_10S
Molecules tropicalis laevis.L laevis.S
Gene GBrowse 8.0 JBrowse 8.0 GBrowse 7.1 JBrowse 7.1 GBrowse 4.1 JGI Genome 4.1 Ensembl 4.1 GBrowse 9.1 JBrowse 9.1 GBrowse 9.1 JBrowse 9.1 GBrowse 6.0
Entrez Gene
Entrez Gene
Entrez Gene
mRNA Refseq NCBI Nucleotide Refseq
Protein Refseq Swiss-Prot TrEMBL NCBI Protein TrEMBL Refseq Swiss-Prot TrEMBL
Genomic tropicalis laevis.L laevis.S
Genome Browser
GBrowse
tropicalis genome v8.0 gene model
GBrowse
laevis genome v9.1 gene model
GBrowse
laevis genome v9.1 gene model
Links
Genomic Synteny Genomicus   Metazome
Expression tropicalis laevis.L laevis.S
Ensembl Ensembl
UniGene Str.3196 [+] [+]
RNA-Seq profile Stage profile: Stage profile:       Tissue heatmap:
Images 4 expression image(s) for tropicalis and laevis
Data Mining tropicalis laevis.L laevis.S
XenMine cpsf4 cpsf4.L cpsf4.S
Phenotype tropicalis laevis.L laevis.S
Smith Morpholino Screen tgas053l04      
Orthology
MOD Entrez Gene Genetic Phenotypes Gene Expression
human
OMIM:Gene, HGNC, GeneCards CPSF4 OMIM, MalaCards, KEGG Disease, DECIPHER Ensembl, Protein Atlas, Allen Brain Atlas
mouse
MGI Cpsf4 MGI, IMPC Ensembl, Eurexpress, MGI, Allen Brain Atlas
zebrafish
ZFIN cpsf4 ZFIN Ensembl
chicken
GEISHA CPSF4 Ensembl
fruit fly
worm
WORMBASE
Publications
First: Somatic hypermutation of the new antigen receptor gene (NAR) in the nurse shark does not generate the repertoire: possible role in antigen-driven reactions in the absence of germinal centers. [Proc Natl Acad Sci U S A 1998]
Most recent: Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides. [PLoS Genet 2006]
View All Papers 1 paper(s) referencing morpholinos
Functional Ontologies tropicalis laevis.L laevis.S
GO 8 terms 2 terms 5 terms
EC
PANTHER cpsf4
KEGG Pathways K14404 K14404 K14404
KOG [A] Polyadenylation factor I complex, subunit, Yth1 (CPSF subunit)
Reagents tropicalis laevis.L laevis.S
CRISPR / TALEN CRISPR tools CRISPR tools CRISPR tools
Clones
GE Dharmacon GE Dharmacon GE Dharmacon
Source BioScience
Morpholino cpsf4 MO1 cpsf4 MO1 cpsf4 MO1
ORF cpsf4 ORF1
Affymetrix 1.0 Str.3196.1.S1_a_at [+]
Affymetrix 2.0 Xl2.25683.1.S1_at

Symbol legend[+]

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